BAC Information

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BAC

Clone NameB6Ng01-341C19
Chromosome6 (Build37)
Map Location 86,267,571 - 86,474,466
singlet/doubletdoublet
Overlap geneLOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik
Upstream geneSfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094
Downstream genePcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341C19.bB6Ng01-341C19.g
ACCGA124642GA124643
length1,025436
definitionB6Ng01-341C19.b B6Ng01-341C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,267,571 - 86,268,591)(86,474,025 - 86,474,466)
sequence
tcttaattatctataaaaacatactgtcagccatgctgctttcatggggc
tcaagccttacagcttaactgatttcttccctgtcacggtgaccaaatag
ctagcaaaccaaggaggaaagatgtcttctggctcgtggtgcgagggata
cagtccatcatggtagaggaggcatggcagcaagacccacaccagtgtga
gtgaaaaactgcttgcttctggggctggagagatggctcagtggctaaga
gcactgactgctcttccgaaggtcctgagttcaaatcccagtgaccacat
ggtggttcacaactatccataatgaaacctgataccttcttctggggtgc
ctgaagacggctatagtgtacttacatatagtaaataaataaaatctaaa
aagaaaggagaaaagaaaagactgcttgcttccatctcagcgggtcaggg
aacaacaaggaggatgcaggtacgctgcttatgttttttttgttttgttt
tttttcccgagacagggtttctctgtgtagccctggctgtcctggaactc
actctgtagaccaggctggcctcgtactcaaaaatctgcctgcctctgcc
tctgcctccaaagtgctgggattaaaggcgtgcgccaccactcttttttt
tattccttttttgtgcatatctgtgtgtggtgtgcttgtgtatatgcatt
tctggtatgtgtgtggggggcacacgtgtgtgctttgagtttgtgtgtct
gtaagcatgtgtgcatttgaaaggcttcaatgtaaggaatcgtcctccat
aactctcccaccttgtcactgaggcaaggtctctcaatcaaacccagagc
tcactgatatggctttgtcccgccagctggcttgctctggggataatgtc
ctatctctgccttctgggtctctggggatctgaacattggggcccctctg
tatggtaagtgctttaactgttgtgccatcctctcaactccttttatccg
tcctaaaccccagacctgtgggatg
ctatcttaaattcttcggttgctgctttctttcccttccctgttttaagt
atggggtgcttggcggccagggggagaagggtggcccgcccttgttcctt
gcaagcttttcttgccttatcgctgagattcccctccctctgccccaaca
aaggaacggcaggttgggcctgctttgggatgtttacaaaagatgggtct
cttcctgggagtgacatatccaacctagttccagagaggcctctgccttt
ttctctggtggaagatacaggtttttctcgggtggaaaaactgcccgttc
agcaggacagggtggatggagagcgtctagcccgttgtccgctaccccca
tcccgcggggcaaacttggccaggaacaataaaataatctgtgggaaggc
ttgtgggggtggggggcagggactaggaggaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86267571_86268591
seq2: B6Ng01-341C19.b_50_1074

seq1  TCTTAATTATCTATAAAAACATACTGTCAGCCATGCTGCTTTCATGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTATCTATAAAAACATACTGTCAGCCATGCTGCTTTCATGGGGC  50

seq1  TCAAGCCTTACAGCTTAACTGATTTCTTCCCTGTCACGGTGACCAAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCTTACAGCTTAACTGATTTCTTCCCTGTCACGGTGACCAAATAG  100

seq1  CTAGCAAACCAAGGAGGAAAGATGTCTTCTGGCTCGTGGTGCGAGGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAACCAAGGAGGAAAGATGTCTTCTGGCTCGTGGTGCGAGGGATA  150

seq1  CAGTCCATCATGGTAGAGGAGGCATGGCAGCAAGACCCACACCAGTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCATCATGGTAGAGGAGGCATGGCAGCAAGACCCACACCAGTGTGA  200

seq1  GTGAAAAACTGCTTGCTTCTGGGGCTGGAGAGATGGCTCAGTGGCTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAACTGCTTGCTTCTGGGGCTGGAGAGATGGCTCAGTGGCTAAGA  250

seq1  GCACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGTGACCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGTGACCACAT  300

seq1  GGTGGTTCACAACTATCCATAATGAAACCTGATACCTTCTTCTGGGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTCACAACTATCCATAATGAAACCTGATACCTTCTTCTGGGGTGC  350

seq1  CTGAAGACGGCTATAGTGTACTTACATATAGTAAATAAATAAAATCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACGGCTATAGTGTACTTACATATAGTAAATAAATAAAATCTAAA  400

seq1  AAGAAAGGAGAAAAGAAAAGACTGCTTGCTTCCATCTCAGCGGGTCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAGAAAAGAAAAGACTGCTTGCTTCCATCTCAGCGGGTCAGGG  450

seq1  AACAACAAGGAGGATGCAGGTACGCTGCTTATGTTTTTTTTGTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAGGAGGATGCAGGTACGCTGCTTATGTTTTTTTTGTTTTGTTT  500

seq1  TTTTTCCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  550

seq1  ACTCTGTAGACCAGGCTGGCCTCGTACTCAAAAATCTGCCTGCCTCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTCGTACTCAAAAATCTGCCTGCCTCTGCC  600

seq1  TCTGCCTCCAAAGTGCTGGGATTAAAGGCGTGCGCCACCACTC-TTTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTGCCTCCAAAGTGCTGGGATTAAAGGCGTGCGCCACCACTCTTTTTTT  650

seq1  TATTCC-TTTTTGTGCATATCTGTGTGTGGTGTGCTTGTGTATATGCATT  698
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTTTTTGTGCATATCTGTGTGTGGTGTGCTTGTGTATATGCATT  700

seq1  TCTGGTATGTGTGT-GGGGGCACACGTGTGTGC-TTGAGTTTGTGTGTCT  746
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  TCTGGTATGTGTGTGGGGGGCACACGTGTGTGCTTTGAGTTTGTGTGTCT  750

seq1  GTAAGCATGTGTGCATTTG-AAGGC-TCAATGTAAGGAATCGTCCTCCAT  794
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  GTAAGCATGTGTGCATTTGAAAGGCTTCAATGTAAGGAATCGTCCTCCAT  800

seq1  AACTCTCCCACCTTGTTCACTGAGGCAAGGTCTCTCAATCAAACCCAGAG  844
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACTCTCCCACCTTG-TCACTGAGGCAAGGTCTCTCAATCAAACCCAGAG  849

seq1  CTCACTGATATGGC-TTGTCCCGCCAGCTGGCCTGCTCTGGGGAATAATG  893
      |||||||||||||| ||||||||||||||||| |||||||||| ||||||
seq2  CTCACTGATATGGCTTTGTCCCGCCAGCTGGCTTGCTCTGGGG-ATAATG  898

seq1  TCCTATCTCTGCCTTCTGGGTCTCTGGGGATCTGAACA-TGGGGCCCCAC  942
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  TCCTATCTCTGCCTTCTGGGTCTCTGGGGATCTGAACATTGGGGCCCCTC  948

seq1  TTGTATGGGAAGTGCTTTAACTGTTGTGCCATCTCTC-CAACTCCTTTTT  991
       ||||||| |||||||||||||||||||||||| ||| ||||||||||| 
seq2  -TGTATGGTAAGTGCTTTAACTGTTGTGCCATC-CTCTCAACTCCTTTT-  995

seq1  ATTCCGTCTAAGACCCCAGACC-GTGGGATG  1021
        ||||||  | |||||||||| ||||||||
seq2  -ATCCGTCCTAAACCCCAGACCTGTGGGATG  1025

seq1: chr6_86474025_86474466
seq2: B6Ng01-341C19.g_67_508 (reverse)

seq1  CCCCTTCCTCCTAGTCCCTGCCCCCCACCCCCACAAGCCTTCCCACAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTCCTAGTCCCTGCCCCCCACCCCCACAAGCCTTCCCACAGAT  50

seq1  TATTTTATTGTTCCTGGCCAAGTTTGCCCCGCGGGATGGGGGTAGCGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTGTTCCTGGCCAAGTTTGCCCCGCGGGATGGGGGTAGCGGAC  100

seq1  AACGGGCTAGACGCTCTCCATCCACCCTGTCCTGCTGAACGGGCAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGCTAGACGCTCTCCATCCACCCTGTCCTGCTGAACGGGCAGTTTT  150

seq1  TCCACCCGAGAAAAACCTGTATCTTCCACCAGAGAAAAAGGCAGAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCGAGAAAAACCTGTATCTTCCACCAGAGAAAAAGGCAGAGGCCT  200

seq1  CTCTGGAACTAGGTTGGATATGTCACTCCCAGGAAGAGACCCATCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAACTAGGTTGGATATGTCACTCCCAGGAAGAGACCCATCTTTTG  250

seq1  TAAACATCCCAAAGCAGGCCCAACCTGCCGTTCCTTTGTTGGGGCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCCCAAAGCAGGCCCAACCTGCCGTTCCTTTGTTGGGGCAGAGG  300

seq1  GAGGGGAATCTCAGCGATAAGGCAAGAAAAGCTTGCAAGGAACAAGGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAATCTCAGCGATAAGGCAAGAAAAGCTTGCAAGGAACAAGGGCG  350

seq1  GGCCACCCTTCTCCCCCTGGCCGCCAAGCACCCCATACTTAAAACAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCCTTCTCCCCCTGGCCGCCAAGCACCCCATACTTAAAACAGGGA  400

seq1  AGGGAAAGAAAGCAGCAACCGAAGAATTTAAGATAGGAATTC  442
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGAAAGCAGCAACCGAAGAATTTAAGATAGGAATTC  442