BAC Information

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BAC

Clone NameB6Ng01-341N23
Chromosome6 (Build37)
Map Location 133,511,992 - 133,660,051
singlet/doubletdoublet
Overlap geneEG626372, LOC100043649
Upstream genePrh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884
Downstream geneLOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341N23.bB6Ng01-341N23.g
ACCGA125132GA125133
length1,067614
definitionB6Ng01-341N23.b B6Ng01-341N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,511,992 - 133,513,058)(133,659,489 - 133,660,051)
sequence
gaattccccagtactgtcatccacattacatgagcaagtcaccatggttg
tctcctttgtttcttctttttacctaatttcatacttgaagatctaccat
attcccttggtccagaacacatgtttccaggttgcctccctcatagtatc
ttagactaagcacttctatataagacttttgagaaactcaaaaccatggg
gataattttcattaaattacaaaatattttcactaaaatttcatgcctgt
gcctctagcctctattttctcatgaacttttccttctttcttcctcttct
cccacatctgatcaattcttataccacattgagcagtttgtcttcactat
gaagcccgagggcttacatctcagatgttcatgtggcaatggcctcactt
cagaccctgtgctaagtgagctggagtgggtaatgtcctctgagatgtca
tctttgctacaataggttctccacttgctgtggtgaggactgtttctcct
gtgttcatgggccaatccattaattcctgttggccccactgtttcctgtg
cacagtgggaacacattgagtttctaatgtacatccctagttgtccctgt
gagataaggagtctcgccatcgaggacatacacacaggacacactcggat
ccttctgcagcatagctttaatgcatctcgagagaaagatgatcagcttc
tggggaggagacccagaacacaggaaactcggtctttaaatagaccacaa
gagcagttggagacgtttttttcaccctgactggttgctcaccatcagcc
cagatgacgccacgggacaggcagggcacaaaggaatgggaaaaataccc
cagcacatgagcagactactttgtttaccagttagaacaccagttatcag
cgccatcttgtagtggtgattgcaagggcggctcctcacatctccccctt
ttctttatttaaaaggcaacaggccacccagtactgagagtggaagatag
aaggtcaaatcccagtgtgcaaaaatagggcattacacaaaacttctctt
gctcatcacctggaggg
gaattcagtccattgatgttgagagatatgaatgacatagattttatttc
aaggtcggtgaagttaatgtgtatgtttttgtgggggagggagacagctc
ttctcttctgtgaaattctgtactggtatggaattatttcttgtgtattc
ttggatgtagctctcctttttggtttgggtaagttagaatgaaattgttc
gattggatttcaatacacacattgccgaaccaagacgccttgagtttgga
cataatcgttttaaaaaacataattaaagataacaaaacttctgaaaata
ctattcagataaaaattaactcaattccaagtgcaaaatattttaaatac
attcttactctgaatttctttacaagatatatcttcattctttcaacaaa
tgagttcttttgacactgagatagtacccaagactatgcattttacctga
gagaatcatagttcttgtggatgtcagaatttttctgatcctaagttaat
gcaggtgaaacttaggctcttgtaacctacaagtgacatctatcataaga
gtaggtttttctgggctaaatgctctgtgtgagtatttagggagtgggtg
tctgggatgaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_133511992_133513058
seq2: B6Ng01-341N23.b_46_1112

seq1  GAATTCCCCAGTACTGTCATCCACATTACATGAGCAAGTCACCATGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGTACTGTCATCCACATTACATGAGCAAGTCACCATGGTTG  50

seq1  TCTCCTTTGTTTCTTCTTTTTACCTAATTTCATACTTGAAGATCTACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTGTTTCTTCTTTTTACCTAATTTCATACTTGAAGATCTACCAT  100

seq1  ATTCCCTTGGTCCAGAACACATGTTTCCAGGTTGCCTCCCTCATAGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTGGTCCAGAACACATGTTTCCAGGTTGCCTCCCTCATAGTATC  150

seq1  TTAGACTAAGCACTTCTATATAAGACTTTTGAGAAACTCAAAACCATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTAAGCACTTCTATATAAGACTTTTGAGAAACTCAAAACCATGGG  200

seq1  GATAATTTTCATTAAATTACAAAATATTTTCACTAAAATTTCATGCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTTCATTAAATTACAAAATATTTTCACTAAAATTTCATGCCTGT  250

seq1  GCCTCTAGCCTCTATTTTCTCATGAACTTTTCCTTCTTTCTTCCTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAGCCTCTATTTTCTCATGAACTTTTCCTTCTTTCTTCCTCTTCT  300

seq1  CCCACATCTGATCAATTCTTATACCACATTGAGCAGTTTGTCTTCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATCTGATCAATTCTTATACCACATTGAGCAGTTTGTCTTCACTAT  350

seq1  GAAGCCCGAGGGCTTACATCTCAGATGTTCATGTGGCAATGGCCTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCGAGGGCTTACATCTCAGATGTTCATGTGGCAATGGCCTCACTT  400

seq1  CAGACCCTGTGCTAAGTGAGCTGGAGTGGGTAATGTCCTCTGAGATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCTGTGCTAAGTGAGCTGGAGTGGGTAATGTCCTCTGAGATGTCA  450

seq1  TCTTTGCTACAATAGGTTCTCCACTTGCTGTGGTGAGGACTGTTTCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTACAATAGGTTCTCCACTTGCTGTGGTGAGGACTGTTTCTCCT  500

seq1  GTGTTCATGGGCCAATCCATTAATTCCTGTTGGCCCCACTGTTTCCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATGGGCCAATCCATTAATTCCTGTTGGCCCCACTGTTTCCTGTG  550

seq1  CACAGTGGGAACACATTGAGTTTCTAATGTACATCCCTAGTTGTCCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGGAACACATTGAGTTTCTAATGTACATCCCTAGTTGTCCCTGT  600

seq1  GAGATAAGGAGTCTCGCCATCGAGGACATACACACAGGACACACTCGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGGAGTCTCGCCATCGAGGACATACACACAGGACACACTCGGAT  650

seq1  CCTTCTGCAGCATAGCTTTAATGCATCTCGAGAGAAAGATGATCAGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCAGCATAGCTTTAATGCATCTCGAGAGAAAGATGATCAGCTTC  700

seq1  TGGGGAGGAGACCCAGAACACAGGAAACTCGGTCTTTAAATAGACCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGAGACCCAGAACACAGGAAACTCGGTCTTTAAATAGACCACAA  750

seq1  GAGCAGTTGGAGACG-TTTTTTCACCCTGACTGGTTGCTCACCATCAGCC  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTGGAGACGTTTTTTTCACCCTGACTGGTTGCTCACCATCAGCC  800

seq1  CAGATGACGCCACGGGACAGGCAGGGCAC-AAGGAAT-GGAAAAATACCC  847
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  CAGATGACGCCACGGGACAGGCAGGGCACAAAGGAATGGGAAAAATACCC  850

seq1  CAGCACATGAGCAGACTAC-TTGTTTACCAGTTAGAACACCAGTTATCAG  896
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGCACATGAGCAGACTACTTTGTTTACCAGTTAGAACACCAGTTATCAG  900

seq1  CGCCATCTTGTAGTGGTGATTGCAAGGGCGGCTCCTCACATCTCCCCCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATCTTGTAGTGGTGATTGCAAGGGCGGCTCCTCACATCTCCCCCTT  950

seq1  TTCTTTTATTTAAAAGGCAACAGGCCACCCAGTACTGAGAGTGG-AGATA  995
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTC-TTTATTTAAAAGGCAACAGGCCACCCAGTACTGAGAGTGGAAGATA  999

seq1  G-AGGTCAAATCCCCAGTGTGCAAAAATAGGGGCATTACACAAAACCTTC  1044
      | ||||||||| ||||||||||||||||| ||||||||||||||| ||||
seq2  GAAGGTCAAAT-CCCAGTGTGCAAAAATA-GGGCATTACACAAAA-CTTC  1046

seq1  TCCTTGGCTCATCACCTGGAGGG  1067
      ||  | |||||||||||||||||
seq2  TC--TTGCTCATCACCTGGAGGG  1067

seq1: chr6_133659489_133660051
seq2: B6Ng01-341N23.g_117_683 (reverse)

seq1  TTATTCATCCCAGAC-CCCACTCC--TAATTCTCACACAGTGCATTTAGC  47
      | ||||||||||||| ||||||||   ||| ||||||||| |||||||||
seq2  TGATTCATCCCAGACACCCACTCCCTAAATACTCACACAGAGCATTTAGC  50

seq1  CCAG-AAAACCTACTCTTATGATTGATGTCACTTGTAGGTTACAAGAGCC  96
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAGAAAAACCTACTCTTATGATAGATGTCACTTGTAGGTTACAAGAGCC  100

seq1  TAAGTTTCACCTGCATTAACTTAGGATCAGAAAAATTCTGACATCCACAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCACCTGCATTAACTTAGGATCAGAAAAATTCTGACATCCACAA  150

seq1  GAACTATGATTCTCTCAGGTAAAATGCATAGTCTTGGGTACTATCTCAGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATGATTCTCTCAGGTAAAATGCATAGTCTTGGGTACTATCTCAGT  200

seq1  GTCAAAAGAACTCATTTGTTGAAAGAATGAAGATATATCTTGTAAAGAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAGAACTCATTTGTTGAAAGAATGAAGATATATCTTGTAAAGAAA  250

seq1  TTCAGAGTAAGAATGTATTTAAAATATTTTGCACTTGGAATTGAGTTAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTAAGAATGTATTTAAAATATTTTGCACTTGGAATTGAGTTAAT  300

seq1  TTTTATCTGAATAGTATTTTCAGAAGTTTTGTTATCTTTAATTATGTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTGAATAGTATTTTCAGAAGTTTTGTTATCTTTAATTATGTTTT  350

seq1  TTAAAACGATTATGTCCAAACTCAAGGCGTCTTGGTTCGGCAATGTGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACGATTATGTCCAAACTCAAGGCGTCTTGGTTCGGCAATGTGTGT  400

seq1  ATTGAAATCCAATCGAACAATTTCATTCTAACTTACCCAAACCAAAAAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATCCAATCGAACAATTTCATTCTAACTTACCCAAACCAAAAAGG  450

seq1  AGAGCTACATCCAAGAATACACAAGAAATAATTCCATACCAGTACAGAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTACATCCAAGAATACACAAGAAATAATTCCATACCAGTACAGAAT  500

seq1  TTCACAGAAGAGAAGAGCTGTCTCCCTCCCCCACAAAAACATACACATTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAAGAGAAGAGCTGTCTCCCTCCCCCACAAAAACATACACATTA  550

seq1  ACTTCACCGACCTTGAA  563
      |||||||||||||||||
seq2  ACTTCACCGACCTTGAA  567