BAC Information

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BAC

Clone NameB6Ng01-343H18
Chromosome6 (Build37)
Map Location 68,956,105 - 68,957,323
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460
Downstream geneIgkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343H18.bB6Ng01-343H18.g
ACCGA126247GA126248
length1,2261,168
definitionB6Ng01-343H18.b B6Ng01-343H18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagatttgggccatttattctgccataattttgttaatggtctca
tgatgttttgatcttgactatgctatctttacaactataaatgaatcttt
cttacctatgtatttccttgctctgtgacatccaaacataaaaggaagat
taatcatttgggtgagtgaaagaggcgtttggtttttatctaatgagaat
ttgtgtaaaactcacctaaagaccaaagagagtcaccatttgccaatttt
tatttccagtgctcccccaattcattcttaagtcctcagatttgaacata
attaatatcaatggcttactgtgggagcataagcaacctgacatgcaagt
cactgctgtatagctacgaagtgcttggggaaaggaagcaagtgtgattg
tttatcctaaagaatccacaaaggtgctttctcaggaatgtgctgcatca
tgtttatctgccatttctgaagaccatctgtctttaggactgtctctttc
catagctttggtgacatggaaaagggaccaaactcagagaagtgattaga
gttctcaaagaggcttaaatagaaagcataaacacatatcaccacaacct
aaaacttagaaacatgtgcaaaacaataatgaaatagctacaactcagtt
taaagataaacagaaaaatgaaaagtgtaaaatcaaagaggaaatataca
gagtaaacagcatgacaaacatactgaaaatggacatgggaaataaaagg
gaaagagaagtttctgctacagatactataagtccaaactaggaaagaga
caaagaaaacctagaactatattgggtaaacagatttttattaaatatta
agaattgatgtgttgttttttcccatagtaacagcattgaagaaggtgag
tggaggacactgataatgtagagtcaacctgtgcattagagtgaaagctt
atttttcaaattttctatattttgactttcataaaactgcacagcaaact
attataatgactatctttatttcctccctctcatactttttatatccatg
taatacaactatcttctcaaattccatattattcgctctctatattctat
ttacctaggtactgatatcccacatggagcaatagatgtggttctctttc
tgaacatgggtaaccttatggttcacttaggtagtagagaaatatttgcc
ttttatccctctaataacctaaaggc
gaattcattcctctgctgagggacatctgggctctttccagcttctggct
attataaataaggctgatatgaacatagtggagcatgtgtccttcttact
ggttggaacatcttctggatatatgcccaggagaggtattgcgggatctt
ccagtagtactatgtccaatttctgaggaaccaccagactgatttccaga
gtggttgtacaggcttgcaatcccaccaacaatggaggggtattcctctt
tctctacatcctggccagaatctactgtcacttgaattttttatcttagc
cattctgacttgtgtaaggtagaatctcagggttgctttgatttgcattt
ccctgatgattaaggatgctgtgatctaaacagtcctatatcccttaaag
aaatagaagcagtcattagtagtctcccaaccaaaaaaaaaaaaaaaaaa
aaaagcccaggaccagatgggtttagtgcagagatctatcaaccctttaa
agaagatctaattccagttcttcaaaaactattcaacaaaatagaaggag
aaggtcccttacccatttcattctatgaagccataattactttgatacct
aaaccacagaaagacccaacaaagatagagaacttcagaccaatctccct
tatgaatatcgatgcaaaaatactcaatgaaagtctccctaaccaaatcc
aagaacacatcaaaacaatcatccatcctgaccaagtaggtttcatttca
gggatgcagggatggtttaatatatggaaatccatcaacataatccagta
tataaacaaactcaaagacaaaaaccacatgatcatctcgttagatgcgg
agaaagcatttgccaaaatccaacccccattcatgttaaaagtcttggaa
aaatcaggaattcgaggcccatacctaaacatgataaaagcaatctacag
caaaccagtagcaacatcaaagtaaatggtgagaagctggaagcaatcca
ctaaatcaggattagaagaagctgccactttctcctactcttcacatagt
atttgaagtctagcagagcattggacaacaaaggagatcaaggatacaat
ggaagaagagtcaaaattcactttgcaagtgtagtaatatatataaggtg
aacctctataaatcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68956105_68957323
seq2: B6Ng01-343H18.b_47_1272 (reverse)

seq1  GCCTTTAG--TATTAGA--GACTAAAG--CAATA-TTCTCTACTACTAAA  43
      ||||||||  |||||||  ||  ||||   |||| |||||||||||  ||
seq2  GCCTTTAGGTTATTAGAGGGATAAAAGGCAAATATTTCTCTACTACCTAA  50

seq1  GGTGAA-CATAGGGTTA-CCATGTTTCAGAAGAGGAAACCACATCTA-TG  90
       ||||| |||| ||||| ||||| ||||||| ||  ||||||||||| ||
seq2  -GTGAACCATAAGGTTACCCATG-TTCAGAA-AGAGAACCACATCTATTG  97

seq1  CT-CATGT-GGATATCAGTACCTAGGGTAAATAGATTATAGAGAGCGAAA  138
      || ||||| ||||||||||||||| |||||||||| ||||||||||||| 
seq2  CTCCATGTGGGATATCAGTACCTA-GGTAAATAGAATATAGAGAGCGAAT  146

seq1  TATATGGAATTTTGAGAAGATAGTTGTATTACATGGATATAAAAAGTATG  188
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGAA-TTTGAGAAGATAGTTGTATTACATGGATATAAAAAGTATG  195

seq1  AGAGGGAGGAAATAAAGATAGTCATTATAATAGTTTGCTGTGCAGTTTTA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGAAATAAAGATAGTCATTATAATAGTTTGCTGTGCAGTTTTA  245

seq1  TGAAAGTCAAAATATAGAAAATTTGAAAAATAAGCTTTCACTCTAATGCA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCAAAATATAGAAAATTTGAAAAATAAGCTTTCACTCTAATGCA  295

seq1  CAGGTTGACTCTACATTATCAGTGTCCTCCACTCACCTTCTTCAATGCTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGACTCTACATTATCAGTGTCCTCCACTCACCTTCTTCAATGCTG  345

seq1  TTACTATGGGAAAAAACAACACATCAATTCTTAATATTTAATAAAAATCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGGGAAAAAACAACACATCAATTCTTAATATTTAATAAAAATCT  395

seq1  GTTTACCCAATATAGTTCTAGGTTTTCTTTGTCTCTTTCCTAGTTTGGAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCCAATATAGTTCTAGGTTTTCTTTGTCTCTTTCCTAGTTTGGAC  445

seq1  TTATAGTATCTGTAGCAGAAACTTCTCTTTCCCTTTTATTTCCCATGTCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTATCTGTAGCAGAAACTTCTCTTTCCCTTTTATTTCCCATGTCC  495

seq1  ATTTTCAGTATGTTTGTCATGCTGTTTACTCTGTATATTTCCTCTTTGAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTATGTTTGTCATGCTGTTTACTCTGTATATTTCCTCTTTGAT  545

seq1  TTTACACTTTTCATTTTTCTGTTTATCTTTAAACTGAGTTGTAGCTATTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTTTTCATTTTTCTGTTTATCTTTAAACTGAGTTGTAGCTATTT  595

seq1  CATTATTGTTTTGCACATGTTTCTAAGTTTTAGGTTGTGGTGATATGTGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGTTTTGCACATGTTTCTAAGTTTTAGGTTGTGGTGATATGTGT  645

seq1  TTATGCTTTCTATTTAAGCCTCTTTGAGAACTCTAATCACTTCTCTGAGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTTCTATTTAAGCCTCTTTGAGAACTCTAATCACTTCTCTGAGT  695

seq1  TTGGTCCCTTTTCCATGTCACCAAAGCTATGGAAAGAGACAGTCCTAAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCTTTTCCATGTCACCAAAGCTATGGAAAGAGACAGTCCTAAAG  745

seq1  ACAGATGGTCTTCAGAAATGGCAGATAAACATGATGCAGCACATTCCTGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGTCTTCAGAAATGGCAGATAAACATGATGCAGCACATTCCTGA  795

seq1  GAAAGCACCTTTGTGGATTCTTTAGGATAAACAATCACACTTGCTTCCTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACCTTTGTGGATTCTTTAGGATAAACAATCACACTTGCTTCCTT  845

seq1  TCCCCAAGCACTTCGTAGCTATACAGCAGTGACTTGCATGTCAGGTTGCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGCACTTCGTAGCTATACAGCAGTGACTTGCATGTCAGGTTGCT  895

seq1  TATGCTCCCACAGTAAGCCATTGATATTAATTATGTTCAAATCTGAGGAC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCCCACAGTAAGCCATTGATATTAATTATGTTCAAATCTGAGGAC  945

seq1  TTAAGAATGAATTGGGGGAGCACTGGAAATAAAAATTGGCAAATGGTGAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATGAATTGGGGGAGCACTGGAAATAAAAATTGGCAAATGGTGAC  995

seq1  TCTCTTTGGTCTTTAGGTGAGTTTTACACAAATTCTCATTAGATAAAAAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGGTCTTTAGGTGAGTTTTACACAAATTCTCATTAGATAAAAAC  1045

seq1  CAAACGCCTCTTTCACTCACCCAAATGATTAATCTTCCTTTTATGTTTGG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGCCTCTTTCACTCACCCAAATGATTAATCTTCCTTTTATGTTTGG  1095

seq1  ATGTCACAGAGCAAGGAAATACATAGGTAAGAAAGATTCATTTATAGTTG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAGAGCAAGGAAATACATAGGTAAGAAAGATTCATTTATAGTTG  1145

seq1  TAAAGATAGCATAGTCAAGATCAAAACATCATGAGACCATTAACAAAATT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAGCATAGTCAAGATCAAAACATCATGAGACCATTAACAAAATT  1195

seq1  ATGGCAGAATAAATGGCCCAAATCTGAATTC  1219
      |||||||||||||||||||||||||||||||
seq2  ATGGCAGAATAAATGGCCCAAATCTGAATTC  1226