BAC Information

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BAC

Clone NameB6Ng01-344B23
Chromosome6 (Build37)
Map Location 109,358,523 - 109,359,936
singlet/doubletsinglet
Overlap genenone
Upstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
Downstream geneLOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344B23.bB6Ng01-344B23.g
ACCGA126707GA126708
length1,1581,042
definitionB6Ng01-344B23.b B6Ng01-344B23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaacttttaaattatttcaatatactcttgttgtatcgattat
ccaaattcccctgtgttgcaattcatttgctgcttggataaagagataat
gtgaaattattaatgtgcttttgccataaataattaacttcatcatggga
aaaactggagaagtcaatttttaaaaaagacttctaatagtaatttgtat
ttatctcttctgtctttataactattaaaagctgctcataacacttatta
ctgtcacttgtagaaagaatatgtaattcatcataatatcagatgattta
tgtacagattgtgaagggggcagctctccccttttgccattcataaaatg
gtaagcttccaataaatcactctgcaaagattttcattcaagtgccatct
catatttcagaatagaggaaaggggccctgatagcatgattataaatcaa
accctcattggcatgaccaggtccatgtactattcattaactgatttcag
atatgatattttgttctcattagttttttttttctattacagagatgcag
acccgtgtgtattcattagaattttacacttcttatatcagtgcactgac
tggattaattagctgctaataaccgacatgtgattgtccctttctctctt
ttgaccatgaattatctcctgttgtctacaaaaatctgaagaatagtgtc
accctctagctttgtgggaagtcaagtgcggggggaacagaatgagacac
tgactccatgtgccatgtcccctgaccagtcctgtattctgcttataaag
atagaggaaagaatctgaatactacagtagaggaagaacttaacataggt
accaacatatatgcaaagggctgttcatctaatcatgactctgatttata
ttatatatcatgatcttagtgtgtttcttccagactccagatgttgaaat
ttcatatatatatagtgttgggtaaccttaagttgccctaagacatcctc
tactagcatagccaatttttgttctcagattctttagcaaaataatgaac
agcatgacctcatgttttacagcctattgtattgtagttctgatgcctct
tgttcttaggacttccagcaattcacatgaactcaatctggacagcagtc
ctcaccca

gaattccatgtcaattcttcatggaaatagaaagagcaatttgcaaattc
atctggaataacataaaacctaggatatagaaaactattctcaacaataa
aagaacttcttgtggaatgcccttccctgacctcaagctgtattacaaag
caatagtgataaaaactgcatggtattagtacagagacaagcaggtaaat
gaatggaatagaattaaagacccagaaatgaacccacattcctatagtca
ctttacctttgacaaaggatctaaaaccatccagtagaagaaaagacagc
attttcaaaaatgctcaactggcagttagcatgtagaagaaggcaaattg
atccattttttatcaccttgtacaatgctcaagtccaagtggatcaacga
cctccatataaaaccaaatacactgaaacttacagaggataaagtgggga
ttttgaagcttcgaattcccaggatacaattcacaaactacatgaaactc
acaaagaagaaagatcaaattgtggatagttcaattcttcttagaagggg
gaacaaataacccattgaaggagttgtagagacaaagtgtggagctgaga
ctgaaggaatgaccatacagagactgccccacctggggatacattccata
tacaatcacaaaacccagacactattttttgccaatgctgtctcctgaga
ggttctgcctcacagatgtgaatgctccattggactaagtactgggtccc
caatgtaggagctagagaaaggacccaaggaattgtaggggcttgcagcc
ccaaagaggaacaacaatatgaactaatcagctcccccagagctctcagg
gactaaaccaccaaccaaagagtacacatggtgggactcatgggctacag
ctgcgtaagtaggagagaatgtcctagttggtcttcacgggaggagagcc
ctgtctgtgagactttatgccccagtgtaggatggcaggcagcaaacgga
gtgagtgggtgtgacaatgaggggggaaaggggatgggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109358523_109359936
seq2: B6Ng01-344B23.b_45_1202 (reverse)

seq1  TGGGTGAGGAGAAAAGGAGATACAGTTGTGAGTCCCGGGGAATTGCATAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAGTGCCTTTTCCTGGTCACCCAAACTCTTCTGTTGAAAGGGATTTTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAACACATAAAATAAAGTGTTACGGTGACAGACAAGGACTAACTTAGACT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAAAAAGAGATTTCCTCTGTGGTTTCAGGCCACTTATTTAACATTTTTAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTCAGCTTCCTCTGGTGTGTTTGAAGAAACAGTGAATCTTTTTGTTGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTTTTGATAAGTCTGTGGTGAGG-CTGCTGT-CAGA-TGAG-TCATGT  296
                     || ||||||| ||||||| |||| |||| ||||||
seq2  ---------------TG-GGTGAGGACTGCTGTCCAGATTGAGTTCATGT  34

seq1  GAAATGCTGTGAAGTCTTAAG-ACAAGA-GCATCAGAAATTACATAC-AT  343
      ||| ||||| |||||| |||| |||||| ||||||||| |   |||| ||
seq2  GAATTGCTG-GAAGTCCTAAGAACAAGAGGCATCAGAACTACAATACAAT  83

seq1  AGGCTGTAAAACATTGAGTCATGCTGTTCA-TATTTTGCTAAAGAATTCT  392
      ||||||||||||||   ||||||||||||| ||||||||||||||||   
seq2  AGGCTGTAAAACATGAGGTCATGCTGTTCATTATTTTGCTAAAGAAT--C  131

seq1  TGAG-ACAAAA--TTGCTATGCTAGTAGAGGATGTCTTA-GGCAACTTAA  438
      |||| ||||||  | |||||||||||||||||||||||| ||||||||||
seq2  TGAGAACAAAAATTGGCTATGCTAGTAGAGGATGTCTTAGGGCAACTTAA  181

seq1  GTTTA-CCAACACTATATATATATGAAATTTCAACATCTGGAGTCTGGAA  487
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCCAACACTATATATATATGAAATTTCAACATCTGGAGTCTGGAA  231

seq1  GAAACACACTAAGATCATGATATATAATATAAATCAGAGTCATGATTAGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACACTAAGATCATGATATATAATATAAATCAGAGTCATGATTAGA  281

seq1  TGAACAGCCCTTTGCATATATGTTGGTACCTATGTTAAGTTCTTCCTCTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCCCTTTGCATATATGTTGGTACCTATGTTAAGTTCTTCCTCTA  331

seq1  CTGTAGTATTCAGATTCTTTCCTCTATCTTTATAAGCAGAATACAGGACT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTATTCAGATTCTTTCCTCTATCTTTATAAGCAGAATACAGGACT  381

seq1  GGTCAGGGGACATGGCACATGGAGTCAGTGTCTCATTCTGTTCCCCCCGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGGACATGGCACATGGAGTCAGTGTCTCATTCTGTTCCCCCCGC  431

seq1  ACTTGACTTCCCACAAAGCTAGAGGGTGACACTATTCTTCAGATTTTTGT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTTCCCACAAAGCTAGAGGGTGACACTATTCTTCAGATTTTTGT  481

seq1  AGACAACAGGAGATAATTCATGGTCAAAAGAGAGAAAGGGACAATCACAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAGGAGATAATTCATGGTCAAAAGAGAGAAAGGGACAATCACAT  531

seq1  GTCGGTTATTAGCAGCTAATTAATCCAGTCAGTGCACTGATATAAGAAGT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTTATTAGCAGCTAATTAATCCAGTCAGTGCACTGATATAAGAAGT  581

seq1  GTAAAATTCTAATGAATACACACGGGTCTGCATCTCTGTAATAGAAAAAA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTCTAATGAATACACACGGGTCTGCATCTCTGTAATAGAAAAAA  631

seq1  AAAACTAATGAGAACAAAATATCATATCTGAAATCAGTTAATGAATAGTA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAATGAGAACAAAATATCATATCTGAAATCAGTTAATGAATAGTA  681

seq1  CATGGACCTGGTCATGCCAATGAGGGTTTGATTTATAATCATGCTATCAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACCTGGTCATGCCAATGAGGGTTTGATTTATAATCATGCTATCAG  731

seq1  GGCCCCTTTCCTCTATTCTGAAATATGAGATGGCACTTGAATGAAAATCT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTTCCTCTATTCTGAAATATGAGATGGCACTTGAATGAAAATCT  781

seq1  TTGCAGAGTGATTTATTGGAAGCTTACCATTTTATGAATGGCAAAAGGGG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGTGATTTATTGGAAGCTTACCATTTTATGAATGGCAAAAGGGG  831

seq1  AGAGCTGCCCCCTTCACAATCTGTACATAAATCATCTGATATTATGATGA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCCCCCTTCACAATCTGTACATAAATCATCTGATATTATGATGA  881

seq1  ATTACATATTCTTTCTACAAGTGACAGTAATAAGTGTTATGAGCAGCTTT  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATATTCTTTCTACAAGTGACAGTAATAAGTGTTATGAGCAGCTTT  931

seq1  TAATAGTTATAAAGACAGAAGAGATAAATACAAATTACTATTAGAAGTCT  1237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTATAAAGACAGAAGAGATAAATACAAATTACTATTAGAAGTCT  981

seq1  TTTTTAAAAATTGACTTCTCCAGTTTTTCCCATGATGAAGTTAATTATTT  1287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATTGACTTCTCCAGTTTTTCCCATGATGAAGTTAATTATTT  1031

seq1  ATGGCAAAAGCACATTAATAATTTCACATTATCTCTTTATCCAAGCAGCA  1337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAAAGCACATTAATAATTTCACATTATCTCTTTATCCAAGCAGCA  1081

seq1  AATGAATTGCAACACAGGGGAATTTGGATAATCGATACAACAAGAGTATA  1387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTGCAACACAGGGGAATTTGGATAATCGATACAACAAGAGTATA  1131

seq1  TTGAAATAATTTAAAAGTTTTGAATTC  1414
      |||||||||||||||||||||||||||
seq2  TTGAAATAATTTAAAAGTTTTGAATTC  1158


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