BAC Information

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BAC

Clone NameB6Ng01-344K10
Chromosome6 (Build37)
Map Location 34,801,756 - 34,960,170
singlet/doubletdoublet
Overlap geneAgbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1
Downstream geneCnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344K10.bB6Ng01-344K10.g
ACCGA127083GA127084
length1,192216
definitionB6Ng01-344K10.b B6Ng01-344K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,801,756 - 34,802,809)(34,959,955 - 34,960,170)
sequence
gaattcataattttagtcagccccaaaggaatctcattggccatatggtt
taacagcacaatttcatcaagcatttaaagaagtggttttcactctatgc
tgtaaccctttaacacagttcttcatgttgtggtggcccccagccataaa
attatttcactgctacttcataacagtaattttgctactgttataaattg
taaatatataatatgcaggatatctgatatatgacaccaaagagttgcaa
cccacaggttaaaaaccaaagatttaagaataattaataccagttctgca
gtgacttatagaaaatgagaaaataattcatagttcactttatgaagcta
ctattggcatgataccaaaatcagtcaaagagagaatcaaaattttaaaa
atcaagaaatttaatcatattagcaaatagaattcaatactaaattttaa
aagaattatgatttaccttttcacctatttcaacaagtccagaatggttc
agtgctctaacaagcagtataaccctaaatttttgcaagatagagaagaa
aattcacattatgatattaattggtacaatataaatttttgtgattttaa
aagaactatcagaagagaaggaacagagggcctcatgcagcttgatggag
tccactcttaccattcacacacgctcactcaccactgtgccagttcttga
cacagcaactagacaagaaaaagaaaagggaagaacacagcatctgtttg
tgaaagtggtgttctctatgtagaatatcacatagcatctgtttgtgaaa
gtggtattctctatgtagaatatcacatagcatctgtttgtgaaagtggt
attctctatgtagaatatcacatagcatttctttgtgaaagtagtgttct
ctatgtagaatatcacatagcatctgtgaaagtggtgttctctatgtaga
atatcacatagcatctgtttgtgaaagtggtgttctctatgtagaatatc
acatagcatctgtttgtgaaagtggtgttctctattgtagaatatccaca
taagcatctgtttggtgaaagtgtgttcctctatgtagagcatcctcaga
atttgtttttactacaaacaagttcttctagtctcaagaattatgacaca
tataaaataataatttctctaaaaataaactggacctcctaa
cacttcaatgtcttgcgtcgtttttcttatttcagttatttgtgctttct
gttaggagcttactctctgtaatttctttgaatgtacgtattattgagtc
ccctggctgcgactccatcaatctcactagatgccattactataggactg
atactttttggaagttctgttggcttggggtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34801756_34802809
seq2: B6Ng01-344K10.b_200_1240

seq1  TTATTTCACTGCTACTTCATAACAGTAATTTTGCTACTGTTATAAATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCACTGCTACTTCATAACAGTAATTTTGCTACTGTTATAAATTGT  50

seq1  AAATATATAATATGCAGGATATCTGATATATGACACCAAAGAGTTGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAATATGCAGGATATCTGATATATGACACCAAAGAGTTGCAAC  100

seq1  CCACAGGTTAAAAACCAAAGATTTAAGAATAATTAATACCAGTTCTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGTTAAAAACCAAAGATTTAAGAATAATTAATACCAGTTCTGCAG  150

seq1  TGACTTATAGAAAATGAGAAAATAATTCATAGTTCACTTTATGAAGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTATAGAAAATGAGAAAATAATTCATAGTTCACTTTATGAAGCTAC  200

seq1  TATTGGCATGATACCAAAATCAGTCAAAGAGAGAATCAAAATTTTAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCATGATACCAAAATCAGTCAAAGAGAGAATCAAAATTTTAAAAA  250

seq1  TCAAGAAATTTAATCATATTAGCAAATAGAATTCAATACTAAATTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAATTTAATCATATTAGCAAATAGAATTCAATACTAAATTTTAAA  300

seq1  AGAATTATGATTTACCTTTTCACCTATTTCAACAAGTCCAGAATGGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATGATTTACCTTTTCACCTATTTCAACAAGTCCAGAATGGTTCA  350

seq1  GTGCTCTAACAAGCAGTATAACCCTAAATTTTTGCAAGATAGAGAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTAACAAGCAGTATAACCCTAAATTTTTGCAAGATAGAGAAGAAA  400

seq1  ATTCACATTATGATATTAATTGGTACAATATAAATTTTTGTGATTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATTATGATATTAATTGGTACAATATAAATTTTTGTGATTTTAAA  450

seq1  AGAACTATCAGAAGAGAAGGAACAGAGGGCCTCATGCAGCTTGATGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATCAGAAGAGAAGGAACAGAGGGCCTCATGCAGCTTGATGGAGT  500

seq1  CCACTCTTACCATTCACACACGCTCACTCACCACTGTGCCAGTTCTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTACCATTCACACACGCTCACTCACCACTGTGCCAGTTCTTGAC  550

seq1  ACAGCAACTAGACAAGAAAAAGAAAAGGGAAGAACACAGCATCTGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACTAGACAAGAAAAAGAAAAGGGAAGAACACAGCATCTGTTTGT  600

seq1  GAAAGTGGTGTTCTCTATGTAGAATATCACATAGCATCTGTTTGTGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGTGTTCTCTATGTAGAATATCACATAGCATCTGTTTGTGAAAG  650

seq1  TGGTATTCTCTATGTAGAATATCACATAGCATCTGTTTGTGAAAGTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCTCTATGTAGAATATCACATAGCATCTGTTTGTGAAAGTGGTA  700

seq1  TTCTCTATGTAGAATATCACATAGCATTTCTTTGTGAAAGTAGTGTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATGTAGAATATCACATAGCATTTCTTTGTGAAAGTAGTGTTCTC  750

seq1  TATGTAGAATATCACATAGCATCTGTGAAAGTGGTGTTCTCTATGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGAATATCACATAGCATCTGTGAAAGTGGTGTTCTCTATGTAGAA  800

seq1  TATCACATAGCATCTGTTTGTGAAAGTGGTGTTCTCTATGTAGAATATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATAGCATCTGTTTGTGAAAGTGGTGTTCTCTATGTAGAATATCA  850

seq1  CATAGCATCTGTTTGTGAAAGTGGTGTTCTCTA-TGTAGAATAT-CACAT  898
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  CATAGCATCTGTTTGTGAAAGTGGTGTTCTCTATTGTAGAATATCCACAT  900

seq1  -AGCATCTGTTT-GTGAAAGTGGTGTT-CTCTATGTTAGAGCAT-CTCAA  944
       ||||||||||| |||||||| ||||| ||||||| |||||||| |||| 
seq2  AAGCATCTGTTTGGTGAAAGT-GTGTTCCTCTATG-TAGAGCATCCTCA-  947

seq1  GGAATTTGTTTTTAACTTAACAAACAAGTCCTTCTAGGTCTC-AGAATAT  993
       |||||||||||| |||  |||||||||| |||||| ||||| ||||| |
seq2  -GAATTTGTTTTT-ACT--ACAAACAAGTTCTTCTA-GTCTCAAGAAT-T  991

seq1  ATGACAACAATATAAAAATAATTATATTTCTTTCTATAAAAAATAAACAT  1043
      ||||||   |||| |||||||| || | |||       |||||||||| |
seq2  ATGACA--CATAT-AAAATAATAATTTCTCT-------AAAAATAAAC-T  1030

seq1  GTGACTCCTAA  1054
      |   |||||||
seq2  GGACCTCCTAA  1041

seq1: chr6_34959955_34960170
seq2: B6Ng01-344K10.g_71_286 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACCCCAAGCCAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACCCCAAGCCAACAG  50

seq1  AACTTCCAAAAAGTATCAGTCCTATAGTAATGGCATCTAGTGAGATTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCAAAAAGTATCAGTCCTATAGTAATGGCATCTAGTGAGATTGAT  100

seq1  GGAGTCGCAGCCAGGGGACTCAATAATACGTACATTCAAAGAAATTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCGCAGCCAGGGGACTCAATAATACGTACATTCAAAGAAATTACAG  150

seq1  AGAGTAAGCTCCTAACAGAAAGCACAAATAACTGAAATAAGAAAAACGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGCTCCTAACAGAAAGCACAAATAACTGAAATAAGAAAAACGAC  200

seq1  GCAAGACATTGAAGTG  216
      ||||||||||||||||
seq2  GCAAGACATTGAAGTG  216