BAC Information

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BAC

Clone NameB6Ng01-345D09
Chromosome6 (Build37)
Map Location 36,970,005 - 37,079,152
singlet/doubletdoublet
Overlap geneDgki
Upstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, EG665024
Downstream geneCreb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345D09.bB6Ng01-345D09.g
ACCGA127478GA127479
length1,085387
definitionB6Ng01-345D09.b B6Ng01-345D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,970,005 - 36,971,090)(37,078,760 - 37,079,152)
sequence
gaattctttgttatatagtttccaccaaatcctttcttcaacacaataga
cattttcccaagattctgcactatgaacaaatagaaaacaatttctcctt
tggttgaactcaaggtaaaatagagccatgtctgccatgtgaaaatcttt
gttttcagactataacctgtaattacatttaagattataggaggaaggta
aaaatgtgtgtgaatcccagagtcacttggcagatctattctgaaggccc
ttgttaacatcctacctatccatcaatgctaagatcacttttaggaatgt
cccccaagagcgaaaaggaaggcccttgctttagtctcatgggtatttcc
attaaaagctctatgttctgccaaattctcatccaaaaatcactgggtac
acaccctgctgaaaactatagcctgaactaagattgtctgtggtgggtgc
tgttatcaacttaacatggtctccaatcacctggaaaaggagtttcaatc
agggattgtctagattaagttgccctgtgtcctgatgccacctgtgggag
tggggcagcatcttgattagtagaaagacctttccattgtgggtggcacc
tttccctaggcaggggatcttggattgtaaaggggtaaagaattcgtgta
agagtagcacaagtgcatttattccttgctctctccttttgactgtggat
gtaacaagctacttcaagtaactgccacttgacttcccccaaacggcaga
atgtgacccagaattgtgagtcaaatcactcttttttccttaattgcatt
catcaggatatgttatcacagaaaggggaaactaaaccagaatattgtat
atatatatattcccatcaaactattcttcccaatttcttcttggacatct
gttttgcatcactccataaaaagtcatcgacacttagagggcttaaattt
taaacacagccaacacccaacaccaactgccttgctgaccactcagaaaa
tattcttctttctctttactccttagtgagattatatatctatatatatt
attatatggaattatataatatttgtgtgtgtgtg
ctatctgttggttgcctcttagatttctgggaacagcataggatataaaa
ccagctgaggctaagaaagtgaactgggctagcagagtgagaagagaatg
cacttggtacagaattgggttagtagagaggaaaaggctgttgttgcaga
aagtattgctatgagactgttgagccaagagaagctgagctgagcagata
ggctagaacagttgttatagtttggagctgctaatattgagaaaaccggg
agaagggactgtttaagcagactgttggtgagctgagggaggaacagttg
ggaaagacattgaagggcctgggatggaaactgggaggaatggctgagat
tcaaggattctctttctctccccctctccctctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36970005_36971090
seq2: B6Ng01-345D09.b_48_1132

seq1  GAATTCTTTGTTATATAGTTTCCACCAAATCCTTTCTTCAACACAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTATATAGTTTCCACCAAATCCTTTCTTCAACACAATAGA  50

seq1  CATTTTCCCAAGATTCTGCACTATGAACAAATAGAAAACAATTTCTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCCAAGATTCTGCACTATGAACAAATAGAAAACAATTTCTCCTT  100

seq1  TGGTTGAACTCAAGGTAAAATAGAGCCATGTCTGCCATGTGAAAATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAACTCAAGGTAAAATAGAGCCATGTCTGCCATGTGAAAATCTTT  150

seq1  GTTTTCAGACTATAACCTGTAATTACATTTAAGATTATAGGAGGAAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGACTATAACCTGTAATTACATTTAAGATTATAGGAGGAAGGTA  200

seq1  AAAATGTGTGTGAATCCCAGAGTCACTTGGCAGATCTATTCTGAAGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGTGTGAATCCCAGAGTCACTTGGCAGATCTATTCTGAAGGCCC  250

seq1  TTGTTAACATCCTACCTATCCATCAATGCTAAGATCACTTTTAGGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAACATCCTACCTATCCATCAATGCTAAGATCACTTTTAGGAATGT  300

seq1  CCCCCAAGAGCGAAAAGGAAGGCCCTTGCTTTAGTCTCATGGGTATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGAGCGAAAAGGAAGGCCCTTGCTTTAGTCTCATGGGTATTTCC  350

seq1  ATTAAAAGCTCTATGTTCTGCCAAATTCTCATCCAAAAATCACTGGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGCTCTATGTTCTGCCAAATTCTCATCCAAAAATCACTGGGTAC  400

seq1  ACACCCTGCTGAAAACTATAGCCTGAACTAAGATTGTCTGTGGTGGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGCTGAAAACTATAGCCTGAACTAAGATTGTCTGTGGTGGGTGC  450

seq1  TGTTATCAACTTAACATGGTCTCCAATCACCTGGAAAAGGAGTTTCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCAACTTAACATGGTCTCCAATCACCTGGAAAAGGAGTTTCAATC  500

seq1  AGGGATTGTCTAGATTAAGTTGCCCTGTGTCCTGATGCCACCTGTGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGTCTAGATTAAGTTGCCCTGTGTCCTGATGCCACCTGTGGGAG  550

seq1  TGGGGCAGCATCTTGATTAGTAGAAAGACCTTTCCATTGTGGGTGGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGCATCTTGATTAGTAGAAAGACCTTTCCATTGTGGGTGGCACC  600

seq1  TTTCCCTAGGCAGGGGATCTTGGATTGTAAAGGGGTAAAGAATTCGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAGGCAGGGGATCTTGGATTGTAAAGGGGTAAAGAATTCGTGTA  650

seq1  AGAGTAGCACAAGTGCATTTATTCCTTGCTCTCTCCTTTTGACTGTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCACAAGTGCATTTATTCCTTGCTCTCTCCTTTTGACTGTGGAT  700

seq1  GTAACAAGCTACTTCAAGTAACTGCCACTTGACTTCCCCCAAACGGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAGCTACTTCAAGTAACTGCCACTTGACTTCCCCCAAACGGCAGA  750

seq1  ATGTGACCCAGAATTGTGAGTCAAATCACTCTTTTTTCCTTAATTGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCCAGAATTGTGAGTCAAATCACTCTTTTTTCCTTAATTGCATT  800

seq1  CATCAGGATATGTTATCACAGAAAGGGGAAACTAAACCAGAATATTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGATATGTTATCACAGAAAGGGGAAACTAAACCAGAATATTGTAT  850

seq1  ATATATATATTCCCATCAAACTATTCTTCCCAATTTCTTCTTGGACATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATTCCCATCAAACTATTCTTCCCAATTTCTTCTTGGACATCT  900

seq1  GTTTTGCATCACTCCATAAAAAGTCATCGACACTTAGAGGGCTTAAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCATCACTCCATAAAAAGTCATCGACACTTAGAGGGCTTAAATTT  950

seq1  TAAACACAGCCAACACCCAACACCAACTGCCTTGCTGACCACTCAGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAGCCAACACCCAACACCAACTGCCTTGCTGACCACTCAGAAAA  1000

seq1  TATCTCTTCTCT---TTAACTCCTTAGTGAAGATTTTATATATTTATATA  1047
      ||| |||||| |   || ||||||||||| ||||| ||||| | ||||||
seq2  TAT-TCTTCTTTCTCTTTACTCCTTAGTG-AGATTATATATCTATATATA  1048

seq1  TAAATATATATATGGAA-TATAT-ATATTTGTGTGTGTGTG  1086
      |   ||| ||||||||| ||||| |||||||||||||||||
seq2  T---TAT-TATATGGAATTATATAATATTTGTGTGTGTGTG  1085

seq1: chr6_37078760_37079152
seq2: B6Ng01-345D09.g_66_458 (reverse)

seq1  GGGGAGAGGGAGAGGGGGAGAGAAAGAGAATCCTTGAATCTCAGCCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGGGAGAGGGGGAGAGAAAGAGAATCCTTGAATCTCAGCCATTC  50

seq1  CTCCCAGTTTCCATCCCAGGCCCTTCAATGTCTTTCCCAACTGTTCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTTTCCATCCCAGGCCCTTCAATGTCTTTCCCAACTGTTCCTCC  100

seq1  CTCAGCTCACCAACAGTCTGCTTAAACAGTCCCTTCTCCCGGTTTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCACCAACAGTCTGCTTAAACAGTCCCTTCTCCCGGTTTTCTCA  150

seq1  ATATTAGCAGCTCCAAACTATAACAACTGTTCTAGCCTATCTGCTCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCAGCTCCAAACTATAACAACTGTTCTAGCCTATCTGCTCAGCT  200

seq1  CAGCTTCTCTTGGCTCAACAGTCTCATAGCAATACTTTCTGCAACAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTCTTGGCTCAACAGTCTCATAGCAATACTTTCTGCAACAACAG  250

seq1  CCTTTTCCTCTCTACTAACCCAATTCTGTACCAAGTGCATTCTCTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTCTCTACTAACCCAATTCTGTACCAAGTGCATTCTCTTCTCA  300

seq1  CTCTGCTAGCCCAGTTCACTTTCTTAGCCTCAGCTGGTTTTATATCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTAGCCCAGTTCACTTTCTTAGCCTCAGCTGGTTTTATATCCTAT  350

seq1  GCTGTTCCCAGAAATCTAAGAGGCAACCAACAGATAGGAATTC  393
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCCCAGAAATCTAAGAGGCAACCAACAGATAGGAATTC  393