BAC Information

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BAC

Clone NameB6Ng01-345G05
Chromosome6 (Build37)
Map Location 8,494,550 - 8,605,954
singlet/doubletdoublet
Overlap geneGlcci1, Ica1
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345G05.bB6Ng01-345G05.g
ACCGA127600GA127601
length1,0561,134
definitionB6Ng01-345G05.b B6Ng01-345G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,494,550 - 8,495,608)(8,604,819 - 8,605,954)
sequence
gaattctgttgaaggtttttttttcctgttacaaaggcaaagctaacacc
agtgaaataggaaatttactattttcctacttatttatttgtttgtttat
ttatttatattttattggatgttttatttgtttacatttcaaatgttatc
ctctctcctgatttaccccccagaaactccctatcccatcccccctcctc
ctgcttctgtgagggtgtgcccccactgaaccccacactccagtttcctc
accttcacattcctctacactggggcatcgagccttcacagagcctcttc
tcccattgctgcccgaaaaagccatcctctgctacatatgtggttggagc
catgggtctctccatgtttactccttggttggtggtttagtccctgggag
ctctgggggtctggttggctgatgttgttcttcctatggggttgtaaact
ctttcagctccttcagtcctttctccaactcctccattgggggccctgtg
ctcagtccaatggttggctgcgatcatcgcctctgtacttgtcaggctgt
ggcagagcctctcaggagacagctctataaggctcctgttggcacgcact
tcttggcatccacaatagtgtctgcatttggtgactgtagattgtttttt
aaaaatggagataatggttaggaagcatttttgaaattttttaagaaaag
tttgcacaggtcttgtaaagtagcctacagagtattagcaacatgaatta
tgttgaagtttttttttttttttttttctgttccaaagcaaggctaacac
tagtaaaataggaaatttaccattttcttttcctattttagaagattcct
tagccttttgattttaagaatatttctttctcatatcagaaaaagtaaac
atcttcatttattatgatctgaggtttgatttttatttttcaccaaatat
ttcttgagagtcgtgaactttattaaaatatgtgaatcttatgacataaa
gaacatgtttagacagtagggtagaaggatctagtagaatttggattcgg
gaatat

gaattctcaggccattaaggcttggtgccaactacctcaaggtaaactga
agcctaccttaggaggagggttgcacatgggaggtagcactctcttgtgg
cattctactgtctctggcttctcccttgctgccagggtttccgttggctc
cctaccataaagatgcagagtcctagaccttttcttctgctctgttcttc
aattcatctttcccatttcttcttcactccattcctcacttctggctttc
ccttcctctttctacaaccattggccacaactacagcccccatctttatc
ccttcctcttctattttcaaactgcctttcagcagagaatagaaaatagc
aaaacaaagaacagggaagtgtggtccgtgcctctaatccatctgtgctt
gggaggtggaggcaagagcattggaaagaaatgaaagaaaggtcatcttc
agatatatatttcacacatatatgtatatatacatacatataaatgtata
tgtatatacatattcatacatatacataaataaatatagtcttagtccac
ctggactcaataagacctagtctttaaaatctaaagcaagcttgctcttt
tgttccctgctcttgacttccctcatgttcccttgtgcatatgtgcttca
caggccacagggcttggccgtgtccacatcaggaggtatttgctagcaat
acttgtattcccagcacagcacagggctccagcagccagcattacacagc
acgcatagccagatctttctggaacgaggctcacagtcaacagatgaagc
acatagtagcatctgctcccatctccagctgtagcgttattggtgaaagc
tacctgggagaaggccagccctctgcgtgcatgagatacacaggcctcac
ttaattgaagcaattgaaaggacaagctaaaggtcatatactgttgtaag
acttgccaaagggaaaaggaatagtctgagaggatgagtcagaaggacca
ggcccatgtcacaaaagcaaattctagagtctgaggggagtagtgggggg
agagcggggtcctgggtttgtagctcaagggattgtctgtgatgatctag
attctgccttcagggttccctcaggaccctatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8494550_8495608
seq2: B6Ng01-345G05.b_47_1102

seq1  GAATTCTGTTGAAGGTTTTTTTTTCCTGTTACAAAGGCAAAGCTAACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGAAGGTTTTTTTTTCCTGTTACAAAGGCAAAGCTAACACC  50

seq1  AGTGAAATAGGAAATTTACTATTTTCCTACTTATTTATTTGTTTGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATAGGAAATTTACTATTTTCCTACTTATTTATTTGTTTGTTTAT  100

seq1  TTATTTATATTTTATTGGATGTTTTATTTGTTTACATTTCAAATGTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATATTTTATTGGATGTTTTATTTGTTTACATTTCAAATGTTATC  150

seq1  CTCTCTCCTGATTTACCCCCCAGAAACTCCCTATCCCATCCCCCCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTGATTTACCCCCCAGAAACTCCCTATCCCATCCCCCCTCCTC  200

seq1  CTGCTTCTGTGAGGGTGTGCCCCCACTGAACCCCACACTCCAGTTTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGTGAGGGTGTGCCCCCACTGAACCCCACACTCCAGTTTCCTC  250

seq1  ACCTTCACATTCCTCTACACTGGGGCATCGAGCCTTCACAGAGCCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACATTCCTCTACACTGGGGCATCGAGCCTTCACAGAGCCTCTTC  300

seq1  TCCCATTGCTGCCCGAAAAAGCCATCCTCTGCTACATATGTGGTTGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGCTGCCCGAAAAAGCCATCCTCTGCTACATATGTGGTTGGAGC  350

seq1  CATGGGTCTCTCCATGTTTACTCCTTGGTTGGTGGTTTAGTCCCTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTCTCTCCATGTTTACTCCTTGGTTGGTGGTTTAGTCCCTGGGAG  400

seq1  CTCTGGGGGTCTGGTTGGCTGATGTTGTTCTTCCTATGGGGTTGTAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGGTCTGGTTGGCTGATGTTGTTCTTCCTATGGGGTTGTAAACT  450

seq1  CTTTCAGCTCCTTCAGTCCTTTCTCCAACTCCTCCATTGGGGGCCCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCTCCTTCAGTCCTTTCTCCAACTCCTCCATTGGGGGCCCTGTG  500

seq1  CTCAGTCCAATGGTTGGCTGCGATCATCGCCTCTGTACTTGTCAGGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCAATGGTTGGCTGCGATCATCGCCTCTGTACTTGTCAGGCTGT  550

seq1  GGCAGAGCCTCTCAGGAGACAGCTCTATAAGGCTCCTGTTGGCACGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCCTCTCAGGAGACAGCTCTATAAGGCTCCTGTTGGCACGCACT  600

seq1  TCTTGGCATCCACAATAGTGTCTGCATTTGGTGACTGTAGATTGTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCATCCACAATAGTGTCTGCATTTGGTGACTGTAGATTGTTTTTT  650

seq1  AAAAATGGAGATAATGGTTAGGAAGCATTTTTGAAAATTTTTTAAGAAAA  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAAATGGAGATAATGGTTAGGAAGCATTTTTG-AAATTTTTTAAGAAAA  699

seq1  GTTTGCACAGGTCTTGTAAAGTAGCCTACAGAGTATTAGCAACATGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCACAGGTCTTGTAAAGTAGCCTACAGAGTATTAGCAACATGAATT  749

seq1  ATGTTGAAG--TTTTTTTTTTTTTTTTTCTGTTCCAAAGCAAGGCTAACA  798
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAGTTTTTTTTTTTTTTTTTTTCTGTTCCAAAGCAAGGCTAACA  799

seq1  CTAGTAAAATAGGAAATTTACCATTTTCTTTTCCTATTTTAGAAGATTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAAATAGGAAATTTACCATTTTCTTTTCCTATTTTAGAAGATTCC  849

seq1  TTAGCCTTTTGATTTTAAGAATATTTC-TTCTCATATCAGAAAAAGTAAA  897
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAGCCTTTTGATTTTAAGAATATTTCTTTCTCATATCAGAAAAAGTAAA  899

seq1  CATCTTCATTTATTATGATCTGAGGTTTGATTTT--ATTTTCACCAAATA  945
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  CATCTTCATTTATTATGATCTGAGGTTTGATTTTTATTTTTCACCAAATA  949

seq1  TTTCTTGAGAAGTCGTGAACTTTATTAAAAATATGTGATTTTTTATTGGA  995
      ||||||||| |||||||||||||||| |||||||||||  | ||||  ||
seq2  TTTCTTGAG-AGTCGTGAACTTTATT-AAAATATGTGA-ATCTTAT--GA  994

seq1  CATAAAGAACATG-TTAGACAGGTAGGGGTAGAAGATACTAAGTAGAAAT  1044
      ||||||||||||| ||||||| ||| |||||||||   || ||||||| |
seq2  CATAAAGAACATGTTTAGACA-GTA-GGGTAGAAGGATCT-AGTAGAATT  1041

seq1  TTGATTTGGGAATAT  1059
      | |||| ||||||||
seq2  TGGATTCGGGAATAT  1056


seq1: chr6_8604819_8605954
seq2: B6Ng01-345G05.g_67_1200 (reverse)

seq1  CCATAGGTTCATTGAGGG-ACACTG-AGGCAGGAAATCTAGATCAACACA  48
      ||||||| ||  |||||| || ||| ||||||  ||||||||||| ||||
seq2  CCATAGGGTC-CTGAGGGAACCCTGAAGGCAG--AATCTAGATCATCACA  47

seq1  GACAACCCTTTAAGGCTACAAAACCAGGCCCCGCCTCTCCCCCACTTACT  98
      ||||| || || | |||||||| ||||| |||  |||||||||   ||| 
seq2  GACAATCCCTTGA-GCTACAAACCCAGGACCCCGCTCTCCCCCCACTAC-  95

seq1  TCCCCTCAGACTCTAGAATTTTGCTTTTGTGACAT-GGCCTGGTCCTTCC  147
      |||||||||||||||||| |||||||||||||||| |||||||||||| |
seq2  TCCCCTCAGACTCTAGAA-TTTGCTTTTGTGACATGGGCCTGGTCCTT-C  143

seq1  TGACTCATTCCTCTCAGACTATTCCTTTT-CCTTTGGCAAGTCTTACAAC  196
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  TGACTCA-TCCTCTCAGACTATTCCTTTTCCCTTTGGCAAGTCTTACAAC  192

seq1  AGTATATGACC-TTAGCTTGTCC-TTCAATTGCTTCAATTAAGTGAGGCC  244
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  AGTATATGACCTTTAGCTTGTCCTTTCAATTGCTTCAATTAAGTGAGGCC  242

seq1  TGTGTATCTCATGCACGCAGAGGGCTGGCCTTCTCCCAGGTAGCTTTCAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCTCATGCACGCAGAGGGCTGGCCTTCTCCCAGGTAGCTTTCAC  292

seq1  CAATAACGCTACAGCTGGAGATGGGAGCAGATGCTACTATGTGCTTCATC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACGCTACAGCTGGAGATGGGAGCAGATGCTACTATGTGCTTCATC  342

seq1  TGTTGACTGTGAGCCTCGTTCCAGAAAGATCTGGCTATGCGTGCTGTGTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTGTGAGCCTCGTTCCAGAAAGATCTGGCTATGCGTGCTGTGTA  392

seq1  ATGCTGGCTGCTGGAGCCCTGTGCTGTGCTGGGAATACAAGTATTGCTAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCTGCTGGAGCCCTGTGCTGTGCTGGGAATACAAGTATTGCTAG  442

seq1  CAAATACCTCCTGATGTGGACACGGCCAAGCCCTGTGGCCTGTGAAGCAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACCTCCTGATGTGGACACGGCCAAGCCCTGTGGCCTGTGAAGCAC  492

seq1  ATATGCACAAGGGAACATGAGGGAAGTCAAGAGCAGGGAACAAAAGAGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACAAGGGAACATGAGGGAAGTCAAGAGCAGGGAACAAAAGAGCA  542

seq1  AGCTTGCTTTAGATTTTAAAGACTAGGTCTTATTGAGTCCAGGTGGACTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTTTAGATTTTAAAGACTAGGTCTTATTGAGTCCAGGTGGACTA  592

seq1  AGACTATATTTATTTATGTATATGTATGAATATGTATATACATATACATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATATTTATTTATGTATATGTATGAATATGTATATACATATACATT  642

seq1  TATATGTATGTATATATACATATATGTGTGAAATATATATCTGAAGATGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATGTATATATACATATATGTGTGAAATATATATCTGAAGATGA  692

seq1  CCTTTCTTTCATTTCTTTCCAATGCTCTTGCCTCCACCTCCCAAGCACAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTCATTTCTTTCCAATGCTCTTGCCTCCACCTCCCAAGCACAG  742

seq1  ATGGATTAGAGGCACGGACCACACTTCCCTGTTCTTTGTTTTGCTATTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTAGAGGCACGGACCACACTTCCCTGTTCTTTGTTTTGCTATTTT  792

seq1  CTATTCTCTGCTGAAAGGCAGTTTGAAAATAGAAGAGGAAGGGATAAAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCTGCTGAAAGGCAGTTTGAAAATAGAAGAGGAAGGGATAAAGA  842

seq1  TGGGGGCTGTAGTTGTGGCCAATGGTTGTAGAAAGAGGAAGGGAAAGCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTGTAGTTGTGGCCAATGGTTGTAGAAAGAGGAAGGGAAAGCCA  892

seq1  GAAGTGAGGAATGGAGTGAAGAAGAAATGGGAAAGATGAATTGAAGAACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGGAATGGAGTGAAGAAGAAATGGGAAAGATGAATTGAAGAACA  942

seq1  GAGCAGAAGAAAAGGTCTAGGACTCTGCATCTTTATGGTAGGGAGCCAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAGAAAAGGTCTAGGACTCTGCATCTTTATGGTAGGGAGCCAAC  992

seq1  GGAAACCCTGGCAGCAAGGGAGAAGCCAGAGACAGTAGAATGCCACAAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCTGGCAGCAAGGGAGAAGCCAGAGACAGTAGAATGCCACAAGA  1042

seq1  GAGTGCTACCTCCCATGTGCAACCCTCCTCCTAAGGTAGGCTTCAGTTTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTACCTCCCATGTGCAACCCTCCTCCTAAGGTAGGCTTCAGTTTA  1092

seq1  CCTTGAGGTAGTTGGCACCAAGCCTTAATGGCCTGAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGTAGTTGGCACCAAGCCTTAATGGCCTGAGAATTC  1134


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