BAC Information

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BAC

Clone NameB6Ng01-347A18
Chromosome6 (Build37)
Map Location 9,891,707 - 9,946,157
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040238, Nxph1
Downstream geneLOC330264, LOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347A18.bB6Ng01-347A18.g
ACCGA128769GA128770
length1,0091,192
definitionB6Ng01-347A18.b B6Ng01-347A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,945,641 - 9,946,157)(9,891,707 - 9,892,931)
sequence
gaattcttataaagtaaatatattttcttatagaaaaagaccctataaac
aaaattgtttaaactcataaatgggtagaaagtaagagcatctttagtct
atatgaaaaacctggtgcaactcacttctctatcttcataatgaaactat
ctgtccacaccatgagtttgtgcttctgtactgtaggacctaagactttg
gatttccaactgagtgacgtgttaattgcggcactttgctgaagtaatct
taaccaacaaaccagacaggaaacagaaaccaaggtacaaagtatccatc
aaaaaaagacaaactcagaaattgatacctagaactacaatcaccataaa
cacagatgcctagaggccatcagaggtacacaatcattaagagtcaaggt
gatatgtcacaaccagaaaacagctgtcctactacttcaacaactgagta
ttccaacactgcagaaacacacacacacacacaagcatgactttaaaatc
aactttatgagaatgagtaaggtccttaagtaggaaatgacagaatccct
taaagaaatacaagaaaatacaaacagtaggaggcactgaataaactctt
gaggaagtacaaggatagcagacaaactacaaatgaaggaaagaaaataa
gttcaatatctcaaaaaagaaaatagaaataataaagaaaacacagtaga
tgctggaaatgaaaaatgtaagtaagcaattggaactacatattcaagca
tcactaatagaatacaagagatggaaggatctcagtattaaagataaaat
cataaaaagcgttaaattagtcataggaaattttaaataaaaaaaaatct
tgacataaaacatccaggaaaattgggacattatgaaaagtcaaaacata
agaataatataaatggaaaggtttaaaatccaagctcaatgtaccagaaa
atatttgcaaactcatagaagaaaaatttcctaagttaaagaggaaaccc
tataagtaa

gaattcatattttacaaatcatatataaatatataggaccccaacatatg
atctctatatttatcgatgtatggacatagtattctgtactatatgttac
ccctgagtttattaattttcatgcagttgtattttcaaattaaatttgat
acatccagtaaaatctttactagatgacttatacatttttagagtactta
taaatggaggactttattttactacaaatgtttacttagatttaaatttg
ctagcattttattttgctaccattcatacagaccattatttgtcacaaat
gttttgcctcagtgaagatgaatgcagagattaatttcccttaattttca
tttcatcctatggattggttggtgtgaaagataccattcagtcaaccaaa
acatggtgtccttcaaacagtaatttttctcccaacacactgctttgctt
ctacagcttagttttaagtacatattgttttaacagattgagtatacttt
ttattcaaaatattttgtttagcaagaaactgtgttcagcataaaataaa
acctcaccatattgtggcagcagattttaaataatgtgtcagacaaatat
tttcaaaacatatctgcttgttaatttgaaattagactgggccttcaaca
cagtaggaaaatgtagctttcagcacttggttaatacaaattcacctctg
attttcactcagttgagcaaggcaccttgtagacccagccagatcaagca
gaatccatctttggaatctttcaggaatacagtaaaactcaaatcaaatg
aataatttttaagtggaatgattattaattgaaatcagattttcaaagtt
gcataaatagcaatggggttgtttcctgatgtttctttgaccttggaaat
ataaaagagatcaataatgttcatttaatttgagagagatgacttccatt
gatgagcatattatagacttttgcattaccactacatgccatatacacat
agagagagtgactagagaatttatattgacgtaataaacgaagcagactt
tatttcagatcacataagtattttctgaagaactagtatttataaaagaa
tcttgtcagaacaccaccaccacacacacccaaaggcctaagttcatgtg
cgaaagacactcatgacaggcaacttttaaaagaacaacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9945641_9946157
seq2: B6Ng01-347A18.b_47_563 (reverse)

seq1  CTCATTCTCATAAAGTTGATTTTAAAGTCATGCTTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTCATAAAGTTGATTTTAAAGTCATGCTTGTGTGTGTGTGTGTG  50

seq1  TTTCTGCAGTGTTGGAATACTCAGTTGTTGAAGTAGTAGGACAGCTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAGTGTTGGAATACTCAGTTGTTGAAGTAGTAGGACAGCTGTTT  100

seq1  TCTGGTTGTGACATATCACCTTGACTCTTAATGATTGTGTACCTCTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTGTGACATATCACCTTGACTCTTAATGATTGTGTACCTCTGATG  150

seq1  GCCTCTAGGCATCTGTGTTTATGGTGATTGTAGTTCTAGGTATCAATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAGGCATCTGTGTTTATGGTGATTGTAGTTCTAGGTATCAATTTC  200

seq1  TGAGTTTGTCTTTTTTTGATGGATACTTTGTACCTTGGTTTCTGTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGTCTTTTTTTGATGGATACTTTGTACCTTGGTTTCTGTTTCCT  250

seq1  GTCTGGTTTGTTGGTTAAGATTACTTCAGCAAAGTGCCGCAATTAACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTTTGTTGGTTAAGATTACTTCAGCAAAGTGCCGCAATTAACACG  300

seq1  TCACTCAGTTGGAAATCCAAAGTCTTAGGTCCTACAGTACAGAAGCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGTTGGAAATCCAAAGTCTTAGGTCCTACAGTACAGAAGCACAA  350

seq1  ACTCATGGTGTGGACAGATAGTTTCATTATGAAGATAGAGAAGTGAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGGTGTGGACAGATAGTTTCATTATGAAGATAGAGAAGTGAGTTG  400

seq1  CACCAGGTTTTTCATATAGACTAAAGATGCTCTTACTTTCTACCCATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGTTTTTCATATAGACTAAAGATGCTCTTACTTTCTACCCATTTA  450

seq1  TGAGTTTAAACAATTTTGTTTATAGGGTCTTTTTCTATAAGAAAATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTAAACAATTTTGTTTATAGGGTCTTTTTCTATAAGAAAATATAT  500

seq1  TTACTTTATAAGAATTC  517
      |||||||||||||||||
seq2  TTACTTTATAAGAATTC  517


seq1: chr6_9891707_9892931
seq2: B6Ng01-347A18.g_67_1258

seq1  GAATTCATATTTTACAAATCATATATAAATATATAGGACCCCAACATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTTTACAAATCATATATAAATATATAGGACCCCAACATATG  50

seq1  ATCTCTATATTTATCGATGTATGGACATAGTATTCTGTACTATATGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATATTTATCGATGTATGGACATAGTATTCTGTACTATATGTTAC  100

seq1  CCCTGAGTTTATTAATTTTCATGCAGTTGTATTTTCAAATTAAATTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTTTATTAATTTTCATGCAGTTGTATTTTCAAATTAAATTTGAT  150

seq1  ACATCCAGTAAAATCTTTACTAGATGACTTATACATTTTTAGAGTACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGTAAAATCTTTACTAGATGACTTATACATTTTTAGAGTACTTA  200

seq1  TAAATGGAGGACTTTATTTTACTACAAATGTTTACTTAGATTTAAATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAGGACTTTATTTTACTACAAATGTTTACTTAGATTTAAATTTG  250

seq1  CTAGCATTTTATTTTGCTACCATTCATACAGACCATTATTTGTCACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTTTATTTTGCTACCATTCATACAGACCATTATTTGTCACAAAT  300

seq1  GTTTTGCCTCAGTGAAGATGAATGCAGAGATTAATTTCCCTTAATTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCTCAGTGAAGATGAATGCAGAGATTAATTTCCCTTAATTTTCA  350

seq1  TTTCATCCTATGGATTGGTTGGTGTGAAAGATACCATTCAGTCAACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCTATGGATTGGTTGGTGTGAAAGATACCATTCAGTCAACCAAA  400

seq1  ACATGGTGTCCTTCAAACAGTAATTTTTCTCCCAACACACTGCTTTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGTCCTTCAAACAGTAATTTTTCTCCCAACACACTGCTTTGCTT  450

seq1  CTACAGCTTAGTTTTAAGTACATATTGTTTTAACAGATTGAGTATACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCTTAGTTTTAAGTACATATTGTTTTAACAGATTGAGTATACTTT  500

seq1  TTATTCAAAATATTTTGTTTAGCAAGAAACTGTGTTCAGCATAAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAAATATTTTGTTTAGCAAGAAACTGTGTTCAGCATAAAATAAA  550

seq1  ACCTCACCATATTGTGGCAGCAGATTTTAAATAATGTGTCAGACAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACCATATTGTGGCAGCAGATTTTAAATAATGTGTCAGACAAATAT  600

seq1  TTTCAAAACATATCTGCTTGTTAATTTGAAATTAGACTGGGCCTTCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAACATATCTGCTTGTTAATTTGAAATTAGACTGGGCCTTCAACA  650

seq1  CAGTAGGAAAATGTAGCTTTCAGCACTTGGTTAATACAAATTCACCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGAAAATGTAGCTTTCAGCACTTGGTTAATACAAATTCACCTCTG  700

seq1  ATTTTCACTCAGTTGAGCAAGGCACCTTGTAGACCCAGCCAGATCAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTCAGTTGAGCAAGGCACCTTGTAGACCCAGCCAGATCAAGCA  750

seq1  GAATCCATCTTTGGAATCTTTCAGGAATACAGTAAAACTCAAATCAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATCTTTGGAATCTTTCAGGAATACAGTAAAACTCAAATCAAATG  800

seq1  AATAATTTTTAAGTGGAATGATTATTAATTGAAATCAGATTTTCAAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTAAGTGGAATGATTATTAATTGAAATCAGATTTTCAAAGTT  850

seq1  GCATAAATAGCAATGGGGTTGTTTCCTGATGTTTCTTTGACCTTGGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAATAGCAATGGGGTTGTTTCCTGATGTTTCTTTGACCTTGGAAAT  900

seq1  ATAAAAGAGATCAATAATGTTCATTTAATTTGAGAGAAGATGACTTCCAT  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATAAAAGAGATCAATAATGTTCATTTAATTTGAGAG-AGATGACTTCCAT  949

seq1  TGATGAGCAATAATTATAGAACTTTTGCATTACCACTACATGCCATATAC  1000
      |||||||||   ||||||| ||||||||||||||||||||||||||||||
seq2  TGATGAGCA--TATTATAG-ACTTTTGCATTACCACTACATGCCATATAC  996

seq1  ACATAGAGAAGAGTGACTAGAGAATTTATATTGACGTAATAAAACGAAGC  1050
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  ACATAGAG-AGAGTGACTAGAGAATTTATATTGACGTAAT-AAACGAAGC  1044

seq1  AAGGACTTTAATTTCAGATCACCATAAGTA-TTTCTGAAGACATAGGTAT  1099
      |  |||||| ||||||||||| |||||||| ||||||||||  |||   |
seq2  A--GACTTT-ATTTCAGATCA-CATAAGTATTTTCTGAAGAACTAGTATT  1090

seq1  TATAAAAGAATCCTGTCAGGAAACAAACAAACAAACAAACAAACAAACAA  1149
      |||||||||||| |||||| | ||              || | || ||| 
seq2  TATAAAAGAATCTTGTCAGAACAC-------------CACCACCACACAC  1127

seq1  ACCAAAAAAGTGTCTTAGTGTTTCATTGTTGCGAAGAGACA-TCATGACC  1198
      ||| |||    | || ||   |||||   |||||| ||||| ||||||| 
seq2  ACCCAAA---GGCCTAAG---TTCAT--GTGCGAA-AGACACTCATGAC-  1167

seq1  AAGGCAACTTTTATAAAAGACAACATT  1225
       |||||||||||| |||  |||||| |
seq2  -AGGCAACTTTTA-AAAGAACAACACT  1192


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