BAC Information

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BAC

Clone NameB6Ng01-347C19
Chromosome6 (Build37)
Map Location 102,571,867 - 102,650,005
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666084, Cntn3, EG666123
Downstream geneChl1, LOC666141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347C19.bB6Ng01-347C19.g
ACCGA128857GA128858
length1,2001,137
definitionB6Ng01-347C19.b B6Ng01-347C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,571,867 - 102,573,075)(102,648,852 - 102,650,005)
sequence
gaattctatttgtcatggattaatggacccatttcactagaccaaaatgg
ttaaaatacaaacagatactttaaatttttttattcaatatgaatatttg
tataattgtaaagactttttaaagtatgataaattgctctaagaggtaaa
aaatatagagacagagaaaggagagggagaaggaaaaaataaattatctg
aattcagattgcatatcacatgggataaattagggaccctgtcatgagct
tgtaaacaaagcactggggatgcaaagaaaggcagatcttcagggcacag
tggctagcaaccataccattctgattgaattccagagtagtgaaagaacc
tatcacaaagaattaaggtctgaggatcatctgatattattttctgggta
ccctttaatgcatgagctcacacatgtgattccccagcccatagtcacgt
ggtcatcaggtaactaagagaagtggagagttattatcgaagtctaactt
gttggttttaaacactatggtcacaatattctatttttaaaattattttg
attcccacatgttaaatacttggtttggctctctatttgctaagaagacg
tggattgacaactgagattgtaattgctcttatattaaaagaaaaatatt
gtagaactcagcattctagacccaaagatgtttatttacaggatatattc
ataagcagaaaaaaaggaagtaaacatagatgaacaattatcaaattaaa
aatactgggaagaatttattaaatatctatttatgtattaatattctaca
ttgacttcttaaaccccaaaacaggtcttggtagtgtcatctccatggga
agactaagatacctgaagtcttacagttaaagtatggttgaacctgaaat
ctattcaggtgtttgattctggagttagaccactatcatttgctcttggt
ataagagcaaatgatagaagagttgctacaaaatgaatggtagaaagagt
tgctacaaaattggcaatgtgttcatggcttcctcaaaggagtgatggac
agaacaactcaaaagaatgagaagtattttcaaccccacatgattgaact
tatatactccataatgaaaatgaaatttagtgaaaatatgtgggaatcat
gaatcactctaaattagcaggcaatgtcagataattggctgggagaaata


gaattcataatgacagtcagaataatgtgaatttaaaactgagtcttgaa
ttttctaacagcacatttgaacattagttgagtaggagaaattgaaccca
tagaaagcaaaactgtaggcaagacgatagagatgatgtattttttgaga
cagtcatatatttagatgcataaagtatacttatatatcccaatgcacaa
aggcatatattagaatctataatagaaaatgaataaataaaaggagtgtg
gatggttttacgttatgtgatctaagcatattttatcatgcaactcgcgt
ctttgttgtgtcaaagaccagtgttgatgttgtgctccgtagcttttggg
ctttgtggatgcttagtattttcatccaacaacataggaatgttcagtta
cattaaatactcagaagataaatttcaattttttagagaaaaatattgaa
tttcaaattttcatgctatgaagtcatgtaaattacatcctacaatgacc
caagacttatatttcaaataactgtcaggtttttttatactcattaacca
tattgttggcacacaagctgtaggcagtagaacattagaaacaaactttg
gcgaaaatacagagcatcctttataaaatacagtcatgtatccaaatgcc
atgctatataaaattggcctagaaattcacactttagtaagctaataaag
ttagtatccagaggctctcatttctatcacagggacactgtgtgtattaa
gcatttggatggcaatcatggctactcttctatgatcttaacaaaatgag
gaagagaaaaactatccttccaaccaatctagacacaaatggagaagaga
tgatgaccaaaggtggaaggttgaatgtataacagtgactatcagttgaa
aggtacagaagacagggatgggggctacaagatcacaagaaaataaagag
aaagagagttttaaaagggaacatatttccagtactgaggaggccgagca
gggtgatcatttgagttcagtcaacttgtcacagtcaattctagtttgca
ggctagtaataagaccaatgcaaataaaacaataacaatgaaatctggga
gaataaaggtaacatagaaaaacattactagattgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_102571867_102573075
seq2: B6Ng01-347C19.b_49_1248

seq1  GAATTCTATTTGTCATGGATTAATGGACCCATTTCACTAGACCAAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTGTCATGGATTAATGGACCCATTTCACTAGACCAAAATGG  50

seq1  TTAAAATACAAACAGATACTTTAAATTTTTTTATTCAATATGAATATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATACAAACAGATACTTTAAATTTTTTTATTCAATATGAATATTTG  100

seq1  TATAATTGTAAAGACTTTTTAAAGTATGATAAATTGCTCTAAGAGGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGTAAAGACTTTTTAAAGTATGATAAATTGCTCTAAGAGGTAAA  150

seq1  AAATATAGAGACAGAGAAAGGAGAGGGAGAAGGAAAAAATAAATTATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGAGACAGAGAAAGGAGAGGGAGAAGGAAAAAATAAATTATCTG  200

seq1  AATTCAGATTGCATATCACATGGGATAAATTAGGGACCCTGTCATGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGATTGCATATCACATGGGATAAATTAGGGACCCTGTCATGAGCT  250

seq1  TGTAAACAAAGCACTGGGGATGCAAAGAAAGGCAGATCTTCAGGGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACAAAGCACTGGGGATGCAAAGAAAGGCAGATCTTCAGGGCACAG  300

seq1  TGGCTAGCAACCATACCATTCTGATTGAATTCCAGAGTAGTGAAAGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGCAACCATACCATTCTGATTGAATTCCAGAGTAGTGAAAGAACC  350

seq1  TATCACAAAGAATTAAGGTCTGAGGATCATCTGATATTATTTTCTGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAAAGAATTAAGGTCTGAGGATCATCTGATATTATTTTCTGGGTA  400

seq1  CCCTTTAATGCATGAGCTCACACATGTGATTCCCCAGCCCATAGTCACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAATGCATGAGCTCACACATGTGATTCCCCAGCCCATAGTCACGT  450

seq1  GGTCATCAGGTAACTAAGAGAAGTGGAGAGTTATTATCGAAGTCTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCAGGTAACTAAGAGAAGTGGAGAGTTATTATCGAAGTCTAACTT  500

seq1  GTTGGTTTTAAACACTATGGTCACAATATTCTATTTTTAAAATTATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTTAAACACTATGGTCACAATATTCTATTTTTAAAATTATTTTG  550

seq1  ATTCCCACATGTTAAATACTTGGTTTGGCTCTCTATTTGCTAAGAAGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCACATGTTAAATACTTGGTTTGGCTCTCTATTTGCTAAGAAGACG  600

seq1  TGGATTGACAACTGAGATTGTAATTGCTCTTATATTAAAAGAAAAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGACAACTGAGATTGTAATTGCTCTTATATTAAAAGAAAAATATT  650

seq1  GTAGAACTCAGCATTCTAGACCCAAAGATGTTTATTTACAGGATATATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTCAGCATTCTAGACCCAAAGATGTTTATTTACAGGATATATTC  700

seq1  ATAAGCAGAAAAAAAGGAAGTAAACATAGATGAACAATTATCAAATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGAAAAAAAGGAAGTAAACATAGATGAACAATTATCAAATTAAA  750

seq1  AATACTGGGAAGAATTTATTAAATATCTA-TTATGTATTAATATTCTACA  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATACTGGGAAGAATTTATTAAATATCTATTTATGTATTAATATTCTACA  800

seq1  TTGACTTCTTAAACCCCAAAACAGGTCTTGGTAGTGTCATCTCCATGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCTTAAACCCCAAAACAGGTCTTGGTAGTGTCATCTCCATGGGA  850

seq1  AGACTAAGATACCTGAAGTCTTACAGTTAAAGTATGGTTGAACCTGAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGATACCTGAAGTCTTACAGTTAAAGTATGGTTGAACCTGAAAT  900

seq1  CTATTCAGGGTGTTTGATTCTGGAGTTAGACCACTATCATTTGCTCTTGG  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCA-GGTGTTTGATTCTGGAGTTAGACCACTATCATTTGCTCTTGG  949

seq1  TATAAGAGCAAATGATAGAAGAGTTGCTACAAAATGAATGGTAG-AAGAG  998
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATAAGAGCAAATGATAGAAGAGTTGCTACAAAATGAATGGTAGAAAGAG  999

seq1  TTGCTACAAAATTGGCAATGTGTTCATGGCTTCCCCAAAGGAGTGATGGA  1048
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGCTACAAAATTGGCAATGTGTTCATGGCTTCCTCAAAGGAGTGATGGA  1049

seq1  CAGACAAACCCAAAAGAATGAGAAGTATTTTCAACCCCACCATGATTGAA  1098
      ||||  ||| ||||||||||||||||||||||||||||| ||||||||||
seq2  CAGAACAACTCAAAAGAATGAGAAGTATTTTCAACCCCA-CATGATTGAA  1098

seq1  C-TATATACCCCATAATGAAAATGAATTTTAGTGAAAAATATGTGGAAAT  1147
      | ||||||| |||||||||||||||| ||||||| ||||||||||| |||
seq2  CTTATATACTCCATAATGAAAATGAAATTTAGTG-AAAATATGTGGGAAT  1147

seq1  CAATGAAAATTCA-TCTAAATTTTAGCAGGCATATGTCGAGTAAATTTTG  1196
      | |||||   ||| ||||||  |||||||||| |||||   |||  || |
seq2  C-ATGAA---TCACTCTAAA--TTAGCAGGCA-ATGTCAGATAA--TTGG  1188

seq1  CTGGGAGGAAATA  1209
      |||||| ||||||
seq2  CTGGGA-GAAATA  1200


seq1: chr6_102648852_102650005
seq2: B6Ng01-347C19.g_69_1205 (reverse)

seq1  TTCAATCTAGTAATG-TTTTCTATGTTACTTTTA-TCTCCCAGATTTTCA  48
      ||||||||||||||| ||||||||||||| |||| ||||||||| |||||
seq2  TTCAATCTAGTAATGTTTTTCTATGTTACCTTTATTCTCCCAGA-TTTCA  49

seq1  TTTGTTTATTTGTTTTATTTTGCATTGGGTCTTATTACCTAGCCCTGGCA  98
       |||||   |||||||| |||||||| |||||||||| ||||||   |||
seq2  -TTGTT--ATTGTTTTA-TTTGCATT-GGTCTTATTA-CTAGCC--TGCA  91

seq1  AACCTAGAATTGACTGTTGACCAAGTTGACCTGGAACTCAAAATGATCCA  148
      || ||||||||||||| ||| |||||||||   |||||| ||||||| ||
seq2  AA-CTAGAATTGACTG-TGA-CAAGTTGAC--TGAACTC-AAATGAT-CA  134

seq1  CCCTGCTCGGCCTCCTCAGTACTGGAAATGTTGTTCCCTTTTAAAAACTC  198
      |||||||||||||||||||||||||||||  ||||||||||| |||||||
seq2  CCCTGCTCGGCCTCCTCAGTACTGGAAAT-ATGTTCCCTTTT-AAAACTC  182

seq1  TCTTTCTTCTTTTATTTTCTTGTGATCTTGTAGCCCCCATCCCTGTCTTC  248
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCT--CTTTATTTTCTTGTGATCTTGTAGCCCCCATCCCTGTCTTC  230

seq1  TGTACCTTTCAACTGATAGTCACTGTTATACATTCAACCTTCCACC-TTG  297
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTACCTTTCAACTGATAGTCACTGTTATACATTCAACCTTCCACCTTTG  280

seq1  GTCATCATCTCTTCTCCATTTGTGTCTAGATTGGTTGGAAGGATAGTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATCTCTTCTCCATTTGTGTCTAGATTGGTTGGAAGGATAGTTTT  330

seq1  TCTCTTCCTCATTTTGTTAAGATCATAGAAGAGTAGCCATGATTGCCATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTCATTTTGTTAAGATCATAGAAGAGTAGCCATGATTGCCATC  380

seq1  CAAATGCTTAATACACACAGTGTCCCTGTGATAGAAATGAGAGCCTCTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTAATACACACAGTGTCCCTGTGATAGAAATGAGAGCCTCTGG  430

seq1  ATACTAACTTTATTAGCTTACTAAAGTGTGAATTTCTAGGCCAATTTTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAACTTTATTAGCTTACTAAAGTGTGAATTTCTAGGCCAATTTTAT  480

seq1  ATAGCATGGCATTTGGATACATGACTGTATTTTATAAAGGATGCTCTGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATGGCATTTGGATACATGACTGTATTTTATAAAGGATGCTCTGTA  530

seq1  TTTTCGCCAAAGTTTGTTTCTAATGTTCTACTGCCTACAGCTTGTGTGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGCCAAAGTTTGTTTCTAATGTTCTACTGCCTACAGCTTGTGTGCC  580

seq1  AACAATATGGTTAATGAGTATAAAAAAACCTGACAGTTATTTGAAATATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATGGTTAATGAGTATAAAAAAACCTGACAGTTATTTGAAATATA  630

seq1  AGTCTTGGGTCATTGTAGGATGTAATTTACATGACTTCATAGCATGAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGGTCATTGTAGGATGTAATTTACATGACTTCATAGCATGAAAA  680

seq1  TTTGAAATTCAATATTTTTCTCTAAAAAATTGAAATTTATCTTCTGAGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTCAATATTTTTCTCTAAAAAATTGAAATTTATCTTCTGAGTA  730

seq1  TTTAATGTAACTGAACATTCCTATGTTGTTGGATGAAAATACTAAGCATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTAACTGAACATTCCTATGTTGTTGGATGAAAATACTAAGCATC  780

seq1  CACAAAGCCCAAAAGCTACGGAGCACAACATCAACACTGGTCTTTGACAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCCCAAAAGCTACGGAGCACAACATCAACACTGGTCTTTGACAC  830

seq1  AACAAAGACGCGAGTTGCATGATAAAATATGCTTAGATCACATAACGTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGACGCGAGTTGCATGATAAAATATGCTTAGATCACATAACGTAA  880

seq1  AACCATCCACACTCCTTTTATTTATTCATTTTCTATTATAGATTCTAATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCACACTCCTTTTATTTATTCATTTTCTATTATAGATTCTAATA  930

seq1  TATGCCTTTGTGCATTGGGATATATAAGTATACTTTATGCATCTAAATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTTGTGCATTGGGATATATAAGTATACTTTATGCATCTAAATAT  980

seq1  ATGACTGTCTCAAAAAATACATCATCTCTATCGTCTTGCCTACAGTTTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTCTCAAAAAATACATCATCTCTATCGTCTTGCCTACAGTTTTG  1030

seq1  CTTTCTATGGGTTCAATTTCTCCTACTCAACTAATGTTCAAATGTGCTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATGGGTTCAATTTCTCCTACTCAACTAATGTTCAAATGTGCTGT  1080

seq1  TAGAAAATTCAAGACTCAGTTTTAAATTCACATTATTCTGACTGTCATTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTCAAGACTCAGTTTTAAATTCACATTATTCTGACTGTCATTA  1130

seq1  TGAATTC  1154
      |||||||
seq2  TGAATTC  1137


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