BAC Information

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BAC

Clone NameB6Ng01-349B04
Chromosome6 (Build37)
Map Location 112,248,961 - 112,411,020
singlet/doubletdoublet
Overlap geneLmcd1, D630042P16Rik, LOC619975, Cav3
Upstream geneGrm7, 1700054K19Rik
Downstream geneOxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349B04.bB6Ng01-349B04.g
ACCGA130166GA130167
length1,2041,190
definitionB6Ng01-349B04.b B6Ng01-349B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,248,961 - 112,250,185)(112,409,811 - 112,411,020)
sequence
gaattcttacatgaactctcagagtaagtaaatgctagacatttgcctgg
aataaaggtgtgctcagtaaatgtaagctacatccatgatcattggggaa
aacacagcatcgagtgggggtagatttagaagccccttcctcctctagag
ggctatattccagaccattctaaatgggcaagttgttcttcatctgttaa
ccagaaataataacagtcttcaaaggttgaccctaattgttagcagaaag
aatgactaaggaagtgaagtcacttggtggaccataaagctattattatc
gggatatttatagtagtgggatagttttaggattggtattttttttccag
aatataatactggctctttctggacagtctcattattcaccctgatccac
tttcctccatcctcactccctgttcactgatagaatccctgtgagtttga
ttgaagtaacctaataggttaaccagccatcctcaatcacctacgtttat
aagattttcggtacaagtcccattcagatagaatccaacatccatttgga
agatattacctcaggaagcattcaggatagtcacagggcatgtgctagca
ctaacagaccactgtcaaatgctaagaccatgactgtcatgtcatcaaga
gattttcctactcatcaatgagagaaactgtaaaatattgggaccagatc
agaaccctttaaagtaccaagtctttgtaggtaatttaatgttagcacaa
tgaggatgccaatcacacaaaactagttgatgcgttgatgccttctaagg
caataaatcctaatcttagtggtgaaagtttcaaaaacagagatgttatt
tatgtctcccaagaccaagacctgaaagacagcatacaggtcactaagta
ttagcagttagtgaaatagctgtctctgaatgatacaggatgcaggggag
ccaatacccagtgtcttcctgccattatatagcaatatgaaagaatctac
agcatcttttatgccatatttacaaaatttcaataatattttaaacaatg
atacatttgcatctcatttacagcactttgtttttatttttacacgaatc
ccaagaagaagagagtagcagataccccttttctattcaacatcatctgt
acttcacctacagtctccgtaatctagtctctcaccctatatggtcttgc
tgac
gaattcagaggccttgtaggagtctgttttctttctatcacataggttct
gggctagaactcagggttattagaattggcagtgggcatcatttctcact
gagccatcttgttggcctcataaaaatcaatttcttcttttttttaagta
actgctagaaaactttaaatttcacagcaggtgggtactttggccatctc
tataatgtctgcctagcttttctgtaagccgggtacggctctagtggaat
cctataaaaactacacatgtaacactaagccacagtgactgtcatgctga
gagcacagtcctcacaattatattcagagctcagccgctggaaggagtga
ctgcagtgctgtggatggtttgacagtgtgcagggtgactgttccggggc
cacactgcacctgtagttccacaggcagctctggcctgtgagtcccagta
cctagcctggatgcccagctactctggggactctgaagctggtggctggg
actttgctctgatggggttcctctggcatttagtttagacagagattgag
tcatggggacccaaggcacttaagtattcttttctgggtgcctgctgaga
ggcctttgcctagtcctggctactaggccttggctgaagcagggagctag
ggaggcagggaacatgaaggatggcctgtaaggctcattctgcttgagag
acaaatactaggcactgctgtggggcaactagtgtctcttggaggggcca
ctgatgaagctggcctcagattaaccccaagcccactatggagacagcct
aaatgctgctggcaaagcaaagcaaccacttggcccaggttctgtatctt
cccagtgactcctctggggcctggggccagagccaagggcaggcacttgg
agctactagtaagatggcatttttggtgtcttccccttaacaccattatg
aaggtggttaaagtttcttcttgccttgctaaggcctgtacaactttgcc
tgtttgctggggttgaagaagacagtatccaggggatttgggggaggctg
actcagtgtgtgagacatgatgtcccacttgggcaccgagcctactccaa
tgtcctcaatgatgttctgggtccgcgttcaccagtctattcctgcatga
atgcttgagtggagcttcgattccggtgtgctcttcggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_112248961_112250185
seq2: B6Ng01-349B04.b_52_1255

seq1  GAATTCTTACATGAACTCTCAGAGTAAGTAAATGCTAGACATTTGCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACATGAACTCTCAGAGTAAGTAAATGCTAGACATTTGCCTGG  50

seq1  AATAAAGGTGTGCTCAGTAAATGTAAGCTACATCCATGATCATTGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGTGTGCTCAGTAAATGTAAGCTACATCCATGATCATTGGGGAA  100

seq1  AACACAGCATCGAGTGGGGGTAGATTTAGAAGCCCCTTCCTCCTCTAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCATCGAGTGGGGGTAGATTTAGAAGCCCCTTCCTCCTCTAGAG  150

seq1  GGCTATATTCCAGACCATTCTAAATGGGCAAGTTGTTCTTCATCTGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATTCCAGACCATTCTAAATGGGCAAGTTGTTCTTCATCTGTTAA  200

seq1  CCAGAAATAATAACAGTCTTCAAAGGTTGACCCTAATTGTTAGCAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATAATAACAGTCTTCAAAGGTTGACCCTAATTGTTAGCAGAAAG  250

seq1  AATGACTAAGGAAGTGAAGTCACTTGGTGGACCATAAAGCTATTATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTAAGGAAGTGAAGTCACTTGGTGGACCATAAAGCTATTATTATC  300

seq1  GGGATATTTATAGTAGTGGGATAGTTTTAGGATTGGTATTTTTTTTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTTATAGTAGTGGGATAGTTTTAGGATTGGTATTTTTTTTCCAG  350

seq1  AATATAATACTGGCTCTTTCTGGACAGTCTCATTATTCACCCTGATCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATACTGGCTCTTTCTGGACAGTCTCATTATTCACCCTGATCCAC  400

seq1  TTTCCTCCATCCTCACTCCCTGTTCACTGATAGAATCCCTGTGAGTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCATCCTCACTCCCTGTTCACTGATAGAATCCCTGTGAGTTTGA  450

seq1  TTGAAGTAACCTAATAGGTTAACCAGCCATCCTCAATCACCTACGTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTAACCTAATAGGTTAACCAGCCATCCTCAATCACCTACGTTTAT  500

seq1  AAGATTTTCGGTACAAGTCCCATTCAGATAGAATCCAACATCCATTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCGGTACAAGTCCCATTCAGATAGAATCCAACATCCATTTGGA  550

seq1  AGATATTACCTCAGGAAGCATTCAGGATAGTCACAGGGCATGTGCTAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTACCTCAGGAAGCATTCAGGATAGTCACAGGGCATGTGCTAGCA  600

seq1  CTAACAGACCACTGTCAAATGCTAAGACCATGACTGTCATGTCATCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGACCACTGTCAAATGCTAAGACCATGACTGTCATGTCATCAAGA  650

seq1  GATTTTCCTACTCATCAATGAGAGAAACTGTAAAATATTGGGACCAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCCTACTCATCAATGAGAGAAACTGTAAAATATTGGGACCAGATC  700

seq1  AGAACCCTTTAAAGTACCAAGTCTTTGTAGGTAATTTAATGTTAGCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTTTAAAGTACCAAGTCTTTGTAGGTAATTTAATGTTAGCACAA  750

seq1  TGAGGATGCCAATCACACAAAACTAGTTGATGCGTTGATGCCTTCTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGCCAATCACACAAAACTAGTTGATGCGTTGATGCCTTCTAAGG  800

seq1  CAATAAATCCTAATCTTAGTGGTGAAAGTTTCAAAAACAGAGATGTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATCCTAATCTTAGTGGTGAAAGTTTCAAAAACAGAGATGTTATT  850

seq1  TATGTCTCCCAAGACCAAGACCTGAAAGACAGCATACAGGTCACTAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCCCAAGACCAAGACCTGAAAGACAGCATACAGGTCACTAAGTA  900

seq1  TTAGCAGTTAGTGAAATAGCTGTCTCTGAATGATACAGGATGCAGGGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGTTAGTGAAATAGCTGTCTCTGAATGATACAGGATGCAGGGGAG  950

seq1  CCAATACCCAGTGTCTTCCTGCCATTATATAGCAATATGAAAGAATCTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCAATACCCAGTGTCTTCCTGCCATTATATAGCAATATGAAAGAATCTA-  999

seq1  CAGCCATC-TTTATGCCATATTTACAAAATTTCAATAATATTTTAAACAA  1049
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAG-CATCTTTTATGCCATATTTACAAAATTTCAATAATATTTTAAACAA  1048

seq1  TGATACATTTGCATCTCATTTTACAAGCAACTTTGTTTTTA-TTTTACAC  1098
      |||||||||||||||||| ||||| ||| |||||||||||| ||||||||
seq2  TGATACATTTGCATCTCA-TTTAC-AGC-ACTTTGTTTTTATTTTTACAC  1095

seq1  GAATCCCAAAGAAGAAAGAGAGTAAGCAGGATACCCCTTTTCTAATTTCC  1148
      ||||||| |||||| |||||||| |||| |||||||||||||||  ||| 
seq2  GAATCCC-AAGAAG-AAGAGAGT-AGCA-GATACCCCTTTTCTA--TTCA  1139

seq1  ACATTCATCCTGAACTCCACACTACAGTCTCCCCTTTAAATTCCTAGTCT  1198
      ||| |||| ||| ||| ||| |||||||||||    |||    |||||| 
seq2  ACA-TCAT-CTGTACTTCAC-CTACAGTCTCC---GTAA---TCTAGTC-  1179

seq1  TCTCAACCCTATATTGTTCTTGCTGAC  1225
      |||| |||||||| || ||||||||||
seq2  TCTC-ACCCTATA-TGGTCTTGCTGAC  1204

seq1: chr6_112409811_112411020
seq2: B6Ng01-349B04.g_69_1258 (reverse)

seq1  GACCGAAGAGCACACGGATCTGGAAGCTCGGATCA-TCAAGGACATTCAC  49
      ||||||||||||||| |   | |||||||    || |||||  |||||| 
seq2  GACCGAAGAGCACACCGGAATCGAAGCTC----CACTCAAG--CATTCA-  43

seq1  TGCAAGGAGATAGACTTGGTGAACCGCGACCCCAAGAACATCAATGAGGA  99
      ||| |||| |||||| ||||||||   |||||  ||||||||| ||||||
seq2  TGC-AGGA-ATAGAC-TGGTGAACGCGGACCC--AGAACATCATTGAGGA  88

seq1  CATTGTGAAGGTAGGCTCGGTGCCCAAGTGGGACATCATGGTCCTCACAC  149
      ||||| ||  ||||||||||||||||||||||||||||||   |||||||
seq2  CATTG-GA--GTAGGCTCGGTGCCCAAGTGGGACATCATG--TCTCACAC  133

seq1  ACTTGAAGTCAGCCTCCCCAAAATCCCCTGGATACTGTCTTCTTCAAACC  199
      |||   ||||||||||||| ||||||||||||||||||||||||| ||||
seq2  ACT--GAGTCAGCCTCCCCCAAATCCCCTGGATACTGTCTTCTTC-AACC  180

seq1  CCAGCAAACAGGCAAAGTTGTACAGGCCTTAGCAAGGCAAGAAGAAAACT  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAGCAAACAGGCAAAGTTGTACAGGCCTTAGCAAGGCAAGAAG-AAACT  229

seq1  TTAACCACCTTCATAATGGTGTTAAGGGGAAGACACCAAAAATGCCATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACCTTCATAATGGTGTTAAGGGGAAGACACCAAAAATGCCATCT  279

seq1  TACTAGTAGCTCCAAGTGCCTGCCCTTGGCTCTGGCCCCAGGCCCCAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTAGCTCCAAGTGCCTGCCCTTGGCTCTGGCCCCAGGCCCCAGAG  329

seq1  GAGTCACTGGGAAGATACAGAACCTGGGCCAAGTGGTTGCTTTGCTTTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTGGGAAGATACAGAACCTGGGCCAAGTGGTTGCTTTGCTTTGC  379

seq1  CAGCAGCATTTAGGCTGTCTCCATAGTGGGCTTGGGGTTAATCTGAGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCATTTAGGCTGTCTCCATAGTGGGCTTGGGGTTAATCTGAGGCC  429

seq1  AGCTTCATCAGTGGCCCCTCCAAGAGACACTAGTTGCCCCACAGCAGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATCAGTGGCCCCTCCAAGAGACACTAGTTGCCCCACAGCAGTGC  479

seq1  CTAGTATTTGTCTCTCAAGCAGAATGAGCCTTACAGGCCATCCTTCATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTTGTCTCTCAAGCAGAATGAGCCTTACAGGCCATCCTTCATGT  529

seq1  TCCCTGCCTCCCTAGCTCCCTGCTTCAGCCAAGGCCTAGTAGCCAGGACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCTCCCTAGCTCCCTGCTTCAGCCAAGGCCTAGTAGCCAGGACT  579

seq1  AGGCAAAGGCCTCTCAGCAGGCACCCAGAAAAGAATACTTAAGTGCCTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGGCCTCTCAGCAGGCACCCAGAAAAGAATACTTAAGTGCCTTG  629

seq1  GGTCCCCATGACTCAATCTCTGTCTAAACTAAATGCCAGAGGAACCCCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCATGACTCAATCTCTGTCTAAACTAAATGCCAGAGGAACCCCAT  679

seq1  CAGAGCAAAGTCCCAGCCACCAGCTTCAGAGTCCCCAGAGTAGCTGGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAAGTCCCAGCCACCAGCTTCAGAGTCCCCAGAGTAGCTGGGCA  729

seq1  TCCAGGCTAGGTACTGGGACTCACAGGCCAGAGCTGCCTGTGGAACTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTAGGTACTGGGACTCACAGGCCAGAGCTGCCTGTGGAACTACA  779

seq1  GGTGCAGTGTGGCCCCGGAACAGTCACCCTGCGCACTGTCAAACCATCCA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGTGCAGTGTGGCCCCGGAACAGTCACCCTGCACACTGTCAAACCATCCA  829

seq1  CAGCACTGCAGTCACTCCTTCCAGCGGCTGAGCTCTGAATATAATTGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGCAGTCACTCCTTCCAGCGGCTGAGCTCTGAATATAATTGTGA  879

seq1  GGACTGTGCTCTCAGCATGACAGTCACTGTGGCTTAGTGTTACATGTGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGCTCTCAGCATGACAGTCACTGTGGCTTAGTGTTACATGTGTA  929

seq1  GTTTTTATAGGATTCCACTAGAGCCGTACCCGGCTTACAGAAAAGCTAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATAGGATTCCACTAGAGCCGTACCCGGCTTACAGAAAAGCTAGG  979

seq1  CAGACATTATAGAGATGGCCAAAGTACCCACCTGCTGTGAAATTTAAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTATAGAGATGGCCAAAGTACCCACCTGCTGTGAAATTTAAAGT  1029

seq1  TTTCTAGCAGTTACTTAAAAAAAAGAAGAAATTGATTTTTATGAGGCCAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGCAGTTACTTAAAAAAAAGAAGAAATTGATTTTTATGAGGCCAA  1079

seq1  CAAGATGGCTCAGTGAGAAATGATGCCCACTGCCAATTCTAATAACCCTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGCTCAGTGAGAAATGATGCCCACTGCCAATTCTAATAACCCTG  1129

seq1  AGTTCTAGCCCAGAACCTATGTGATAGAAAGAAAACAGACTCCTACAAGG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGCCCAGAACCTATGTGATAGAAAGAAAACAGACTCCTACAAGG  1179

seq1  CCTCTGAATTC  1210
      |||||||||||
seq2  CCTCTGAATTC  1190