Query= MSMg01no046_m05.b1 MSMg01no046_m05.b1 CHROMAT_FILE:
MSMg01no046_m05.b1 PHD_FILE: MSMg01no046_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:59 2005
(496 letters)
>mm_chr6_107220486_107221382
Length = 897
Score = 603 bits (312), Expect = e-177
Identities = 327/332 (98%), Gaps = 1/332 (0%)
Strand = Plus / Minus
Query: 6 aattcttctag-aattattttctgtgatgcactcgcttaaagagaaatctaaaggcagag 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aattcttctagaaattattttctgtgatgcactcgcttaaagagaaatctaaaggcagag 273
Query: 65 tgtgaagggatcagagggcaagaaagtttcagggcattttaaaacttaagaatttttaag 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 272 tgtgaagggatcagagggcaagaaggtttcagggcattttaaaacttaagaatttttaag 213
Query: 125 agatatatttattttactttatatgtatgagtgtttgcctgcctgtatgttagtgcacca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 agatatatttattttactttatatgtatgagtgtttgcctgcctgtatgttagtgcacca 153
Query: 185 tatgagtttctagtgctgtcagaagccagatgaggtatcagtgccctggaaatggagctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tatgagtttctagtgctgtcagaagccagatgaggtatcagtgccctggaaatggagctg 93
Query: 245 cagacagatggcatgccatggagctgatgagatatgaaactggtcctcttcaagaacagc 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 92 cagacagatggcatgccatggagctgttgagatatgaaactggtcctcttcaagaacagc 33
Query: 305 aagtactcttaatctctgagccacctctccca 336
||||||||| |||||||||||||| |||||||
Sbjct: 32 aagtactctcaatctctgagccacatctccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space: 431082
Effective search space used: 431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_m05.g1 MSMg01no046_m05.g1 CHROMAT_FILE:
MSMg01no046_m05.g1 PHD_FILE: MSMg01no046_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:59 2005
(483 letters)
>mm_chr6_107133863_107134745
Length = 883
Score = 926 bits (479), Expect = 0.0
Identities = 482/483 (99%)
Strand = Plus / Plus
Query: 1 agtgagtaaggaatgaacctttgtcttcctgcaatgctagtgagctccaaaattgcatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgagtaaggaatgaacctttgtcttcctgcaatgctagtgagctccaaaattgcatct 260
Query: 61 gttcctatgaattgtcttatagggggaaatgatcccagaacagttttaagtgaagcatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcctatgaattgtcttatagggggaaatgatcccagaacagttttaagtgaagcatgc 320
Query: 121 agagatgcaggtagtaaaagatttgttagtctctcacactgtaacatctcatcattttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagatgcaggtagtaaaagatttgttagtctctcacactgtaacatctcatcattttca 380
Query: 181 cttgaaaaagaatggggtcaatgaaggtacttaaaatcttgggatcttaagagagttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgaaaaagaatggggtcaatgaaggtacttaaaatcttgggatcttaagagagttaaa 440
Query: 241 tttctttaatgcatgttacacgctaggaaagatgcctggctcttgcaatactttgtaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctttaatgcatgttacacgctaggaaagatgcctggctcttgcaatactttgtaggt 500
Query: 301 attatcttagaacatcagcatctctactttccattgctcgtattcactttatggatcctg 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatcttagaacatcagcacctctactttccattgctcgtattcactttatggatcctg 560
Query: 361 gccagaaatatgtagaagctaacaaaagacagcagagatggctctgtttcagctgattct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccagaaatatgtagaagctaacaaaagacagcagagatggctctgtttcagctgattct 620
Query: 421 aatattactagattggtagaacttctggaatactggttgaatagaggtttgatttctagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatattactagattggtagaacttctggaatactggttgaatagaggtttgatttctagg 680
Query: 481 ttc 483
|||
Sbjct: 681 ttc 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
