Query= MSMg01no048_m10.b1 MSMg01no048_m10.b1 CHROMAT_FILE:
MSMg01no048_m10.b1 PHD_FILE: MSMg01no048_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:05 2005
(790 letters)
>mm_chr6_83133509_83134698
Length = 1190
Score = 1435 bits (742), Expect = 0.0
Identities = 766/774 (98%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 18 gaattccagactagcctgagctac-aattgagaccctctcaaaagacctaaagaaaagtc 76
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 1042 gaattccagactagcctgagctacaaagtgagaccctctcaaaagacctaaagaaaagtc 983
Query: 77 tgtggaaagagggagtggaacgggcaagatcctgaaagggagtgtgtccaggcaggcaca 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 982 tgtggaaagagggagtggaacgggcaagatcctgaaagggagtgtgtccaggcagacaca 923
Query: 137 cacttgtcgaggggagcagtgaaagccactgggcagagcaaggtgggcacctacggcagt 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 cacttgtcgaggggagcagtgaaagccactgggcagagcaaggtgggcacctacggcagt 863
Query: 197 actgactcaacagcaggcaggcaggcaggcactgctctggcccttccttacacaaccatt 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 actgactcaacagcaggcaggcaggcaggcactgctctggcccttccttacacaaccatt 803
Query: 257 ctaccacacttctcagctctagtcctccaggatgccctccctccacgccaagcctggcta 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctaccacacttctcagctctagtcctccaggatgccctccctccacgccaagcctggcta 743
Query: 317 cctgggaaagcgctgcaaacctgctgcagctgtgattgctgtcaagtgcctgcagtttct 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cctgggaaagcgctgcaaacctgctgcagctgtgattgctgtcaagtgcctgcagtttct 683
Query: 377 aactaggggtctagagcactgaaaactgtctctaatgagtgctgctttggcttggtccct 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aactaggggtctagagcactgaaaactgtctctaatgagtgctgctttggcttggtccct 623
Query: 437 gaacctgatggcctcgttttcctcaaggtgatccagaagacaaactgccatttcctctgg 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaacctgatggcctcgttttcctcaaggtgatccagaagacaaactgccatttcctctgg 563
Query: 497 ccatttcagccccatggttacacacacatgcatgtagcagttggggtggggggcatgcaa 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccatttcagccccatggttacacacacatgcatgtagcagttggggtggggggcatgcaa 503
Query: 557 gagagtgggaggggctcacagcccacccatcggcccagacacaaacagtaaacacaccac 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gagagtgggaggggctcacagcccacccatcggcccagacacaaacagtaaacacaccac 443
Query: 617 cttcttaggcttcagtccccgctgcgtgaggagcaggaaaggtcagagttagagaacaga 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cttcttaggcttcagtccccgctgcgtgaggagcaggaaaggtcagagttagagaacaga 383
Query: 677 ctgtctggcctgacagacatcctgtgcccaagtgctaacatcagctcaggtgaatacacg 736
||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 382 ctgtctggcctgacatacatcctgtgcataagtgttaacatcagctcaggtgaatacacg 323
Query: 737 cacgggaagttaggtaaagcatcgagccctgggcaaagaagggtcccctgagga 790
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caagggaagttaggtaaagcatcgagccctgggcaaagaagggtcccctgagga 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 790
Length of database: 1190
Length adjustment: 10
Effective length of query: 780
Effective length of database: 1180
Effective search space: 920400
Effective search space used: 920400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_m10.g1 MSMg01no048_m10.g1 CHROMAT_FILE:
MSMg01no048_m10.g1 PHD_FILE: MSMg01no048_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:05 2005
(533 letters)
>mm_chr6_83108559_83109491
Length = 933
Score = 1006 bits (520), Expect = 0.0
Identities = 530/534 (99%), Gaps = 2/534 (0%)
Strand = Plus / Plus
Query: 2 tctgactagactacttcccaggtgggatcttaggcaaactccatgagatgtgaatagaaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctgactagactacttcccaggtgggatcttaggcaaactccatgagatgtgaatagaaa 261
Query: 62 tagtggttaaagacggtctagtagtgcaggcctgctctactctactcgggaggttgaagt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tagtggttaaagacggtctagtagtgcaggcctgctctactctactcgggaggttgaagt 321
Query: 122 gaaagtcagagaggatggataacatcaagacaaccatttttcctgctcagcaggcctgag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaaagtcagagaggatggataacatcaagacaaccatttttcctgctcagcaggcctgag 381
Query: 182 tggcagtgtgcaacagggccaagggagattgaatctcagtgctgtgaggggaagagggca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggcagtgtgcaacagggccaagggagattgaatctcagtgctgtgaggggaagagggca 441
Query: 242 ctagctcctgtccctaaccaagaagctatttccaattgacaaccacttggcaaaggaaaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctagctcctgtccctaaccaagaagctatttccaattgacaaccacttggcaaaggaaaa 501
Query: 302 atcagtttcccctgtggactctactggaaaaaccacacttaagggtagtctccatgcgcc 361
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 502 atcagtttcccctgtggactctactggaaaaaccacacctaagggtagtctccacgcgcc 561
Query: 362 aggagtggacggccagtacagcacgaactcagtggtgcttttgtgggtttttttttt--c 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 562 aggagtggacggccagtacagcacgaactcagtggtgcttttgtgggttttttttttttc 621
Query: 420 ttttttgacttaatatggtttcgtttgagcattaaaaaaaaaacctttctcatcttttac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttttttgacttaatatggtttcgtttgagcattaaaaaaaaaacctttctcatcttttac 681
Query: 480 ttgcatatatggtttctgattttgtattttaatgtttttttgtttgtttgtttg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttgcatatatggtttctgattttgtattttaatgtttttttgtttgtttgtttg 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
