BAC Information

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BAC

Clone NameMSMg01-049P11
Chromosome6 (Build37)
Map Location 59,295,401 - 59,370,997
singlet/doubletdoublet
Overlap geneGprin3
Upstream geneLOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2
Downstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049P11.T7 (MSMg01no049_p11.b1)MSMg01-049P11.TJ (MSMg01no049_p11.g1)
ACCAG279211AG279212
length1,2811,266
length of high quality
(start - end)		553 (85 - 637)344 (129 - 472)
definitionCHROMAT_FILE: MSMg01no049_p11.b1 PHD_FILE: MSMg01no049_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:32 2005CHROMAT_FILE: MSMg01no049_p11.g1 PHD_FILE: MSMg01no049_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,370,448 - 59,370,997)(59,295,401 - 59,295,744)
sequence
NNNAAAACAGTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGACTTGGAGTCAAACCTTTAAACTTATGTGTTGTCTTATTCCA
TCCTGGACAGCACGCTCATCCTTCTTTCCCACAATAGAGTGTTTAGATTA
GTATTAATCTGATGCTTTAGCACTGAAGTCAGGTTTAGGATGATAATATT
AAAGGCTGCATTGGACTTGAAAAGGCATTCTTGAAATCCATGAGGAAATG
CATATATAATCTTACAGTTTACATGACTTAGTGTGCTGAATCCCAGTGAG
AAAACCACTCACAACTTTTTCATTGGGCATATGTTGGAGCTAGCAACACA
GTGGTAGCACTCCAGTGTTCAAGCTTGTAATTAAATTCCCTTATCTTGAA
ACTCATTTTAACTTAAGCTCAGACCATTAATTATAGACAGCAATAACTGA
CCCATGGCAAGAGGACTAAATGAAATGACCTCGTGGTTTCTAATACCAAA
TTCAGAGGTGGAGCTTACAAATCTGCGTATACGTATATGTGTATGTGTTT
GTGTATGTGTATATTCCAAAAGATTTTGGAGAATTATAAAGTTGCAGAGG
AGTCTCTGTGAAGTTAGAGCCCAGGCACAGGGTGCGGATGGCCCTTGGGG
CGAGGGGCCGGGGAAGATGAGTGTGGCTGCTTGCTGTTAGAGTCCCCTCC
TTGGATCCTTGGAGGCAGGAGAAAAGACTAATTATTCAGTTTTCCTTTAA
CATTGAGGGGGAGTTTAAGTTACAAGTTTCTTACCATAAAGTAAAATGGA
AGATGATCCGTGAAAAATATCTCTGTGTCTTATTTCAGTAATCTGTTTCC
TACTGAGCTACAATTCCCAACGAAAACTTTGGAAGGAAATTGCTGAATTT
TGCAGTGGGCGAAAATCTGTATACTATACTCCCTAAGGCCCACTGGGTGG
AACCCGGTTGTGTGGAATTTTAAACCTCTTTCGGTCATTATTAATCTGAG
ATGTCCAAAAAAATTCGTGAAAACCCAGCTGTAATAATTCTTGAAGCCAA
ATGGGTCTTCCTTTTGAAATGGTTATATTTTCCTAATATCCTAAAAAGGA
AGTGCTTTTCCTGGCCTTGTCTACGGTTTATAAAATATTTGTTTGTTTAC
TATCGTTTTCTCAAGTGTTTTAGTCCCTTTTTTCTAAACTCTATAAATAC
CCCTTTTCTATATACATGCCTAAAATAAAACTCTATCTCTCTCGTTGTAT
TTTCCTGTCTACCCTTGATCTGTCTCTTCTA

TTTAAACCATGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTTAATCACCGGGAATTCTGGTATTTCCAT
TTATATTGTCCCTCCAGCAATTAGCCAATGCAGTTTTCAGTGTCATGGAA
CCCGGGTCAAATTGAACTAACTTTTAACAATGTCAGTCCTGATCTTTATT
TAATAGATGAAATTTTCCATGAAAAGAAATTAGTAAAATTTGATCAATTC
CTTAAGAAAAACTGTGATAAACTAGGTATTTCTGTTTCAAATTGCCACTA
ATTGGATAATGGTATTGGCCTTGGTATTTTTCTGTACAGAGTATCAGTGT
GTTTCTTAAGGAACTCCCAATTGTCTTGTTGTGATATCTTACTATAATTT
GTTTTCTTTTTGATCTCTTATTTCTCTTTGGTTTGGCCCCATACTGTTTT
ACTACTTCCAAGAGAACGCCTGTCATTGTCTCCTCGTTGAGTCATTATAT
ACACTAGAGAAATCTGGAGATACCTCAACAAAAATGTAAGCTTCCTCTCA
GGCTATGCAAATAAACATTGGTACAGCTCCAATTCAGCTTTCAAACATAT
AAGTGCTTTTCCTCAGTGTGTGTCATTTCCCGATATTGTTCCGAACTCCA
CAAATAGCATTAACAACTCTGAATCCGTTCAGATACCAGACTTTAGTGAG
ATGCCAAATAGGCTGTGCTCTTATTACTTGTCAAATCTGCCATTTGGGTA
TATCATTTAAGGAAGAGCATTCCATTTTCAATCTTAATACGTCCCAATTA
TGAAAGTCCCGACAGATGTAACTATTACTTGGTTTGTTAAAAATTTTTGT
CACAAGTAACAGTTTTAAATAAAACGCATTCTGTCTGGCCCTTCTTTTTT
GAATATCCTCATTACCGTTTGCGCAAATATTGTATTTTAAGTTGTAAAAA
AGGAAAACTACCTATTCTTTTATCCTTTTCGAAACTTTTGGATTCTATTA
TTCCTTTGCTTCGCTTTTCTGCAATTTGTCTTAAAACCATTTCATATTTT
CTAAACTAGCATTATAATCAAACCTCCATTCCGTGGATTTCCAAATAATG
TCTCTCAAATTTACAACCATATAATTGTATTATCTAATTTCTTTCTNTTA
TTGTGTTTCGAAAATGATACCATCCTTCTTGCTTTCAATGTGTATTTACA
ATTATTACCTTTCATCTCATTATTACTACACTTCCCCCGTATTGCCGTAT
CATTCTTCTTATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_p11.b1 MSMg01no049_p11.b1 CHROMAT_FILE:
MSMg01no049_p11.b1 PHD_FILE: MSMg01no049_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:32 2005
         (553 letters)



>mm_chr6_59370356_59371308
          Length = 953

 Score =  940 bits (486), Expect = 0.0
 Identities = 534/550 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgttgtcttattccatcctggacagcacgctcatccttctttcccacaatagagtgttt 60
           ||||| |||||||||||||||||||||| |||||||||||||||| |||||||| |||||
Sbjct: 642 gtgttttcttattccatcctggacagcatgctcatccttctttcctacaatagaatgttt 583

                                                                       
Query: 61  agattagtattaatctgatgctttagcactgaagtcaggtttaggatgataatattaaag 120
           ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 582 agattagtagtaatctgatgctttagcactcaagtcaggtttaggatgataatattgaag 523

                                                                       
Query: 121 gctgcattggacttgaaaaggcattcttgaaatccatgaggaaatgcatatataatctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 522 gctgcattggacttgaaaaggcattcttgaaatccatgaggaaatgcatatataacctta 463

                                                                       
Query: 181 cagtttacatgacttagtgtgctgaatcccagtgagaaaaccactcacaactttttcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cagtttacatgacttagtgtgctgaatcccagtgagaaaaccactcacaactttttcatt 403

                                                                       
Query: 241 gggcatatgttggagctagcaacacagtggtagcactccagtgttcaagcttgtaattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcatatgttggagctagcaacacagtggtagcactccagtgttcaagcttgtaattaa 343

                                                                       
Query: 301 attcccttatcttgaaactcattttaacttaagctcagaccattaattatagacagcaat 360
           ||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||
Sbjct: 342 attcccttatcttgaaactcatcagaacttaagctcagaccattaattatagacagtaat 283

                                                                       
Query: 361 aactgacccatggcaagaggactaaatgaaatgacctcgtggtttctaataccaaattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aactgacccatggcaagaggactaaatgaaatgacctcgtggtttctaataccaaattca 223

                                                                       
Query: 421 gaggtggagcttacaaatctgcgtatacgtatatgtgtatgtgtttgtgtatgtgtatat 480
           ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct: 222 gaggtggagcttagaaatctgcgtataagtatacgtgtatgtgtttgtgtatgtgtattt 163

                                                                       
Query: 481 tccaaaagattttggagaattataaagttgcagaggagtctctgtgaagttagagcccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tccaaaagattttggagaattataaagttgcagaggagtctctgtgaagttagagcccag 103

                     
Query: 541 gcacagggtg 550
           ||||||||||
Sbjct: 102 gcacagggtg 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no049_p11.g1 MSMg01no049_p11.g1 CHROMAT_FILE:
MSMg01no049_p11.g1 PHD_FILE: MSMg01no049_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:32 2005
         (344 letters)



>mm_chr6_59295201_59295944
          Length = 744

 Score =  611 bits (316), Expect = e-179
 Identities = 337/344 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagttttcagtgtcatggaacccgggtcaaattgaactaacttttaacaatgtcagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcagttttcagtgtcatggaacccgggtcaaattgaactaacttttaacaatgtcagtc 260

                                                                       
Query: 61  ctgatctttatttaatagatgaaattttccatgaaaagaaattagtaaaatttgatcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgatctttatttaatagatgaaattttccatgaaaagaaattagtaaaatttgatcaat 320

                                                                       
Query: 121 tccttaagaaaaactgtgataaactaggtatttctgtttcaaattgccactaattggata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttaagaaaaactgtgataaactaggtatttctgtttcaaattgccactaattggata 380

                                                                       
Query: 181 atggtattggccttggtatttttctgtacagagtatcagtgtgtttcttaaggaactccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtattggccttggtatttttctgtacagagtatcagtgtgtttcttaaggaactccc 440

                                                                       
Query: 241 aattgtcttgttgtgatatcttactataatttgttttctttttgatctcttatttctctt 300
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 aattgtcttgttgtgataacttactataatttgttttcattttgatctcttatttctctt 500

                                                       
Query: 301 tggtttggccccatactgttttactacttccaagagaacgcctg 344
           |||||||| | ||||||||||||||| || |||||||| |||||
Sbjct: 501 tggtttgggcacatactgttttactaatttcaagagaaggcctg 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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