BAC Information

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BAC

Clone NameMSMg01-050F16
Chromosome6 (Build37)
Map Location 136,826,493 - 136,850,642
singlet/doubletdoublet
Overlap genenone
Upstream geneGrin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp
Downstream geneErp27, Arhgdib, Pde6h, Rerg, Ptpro, Eps8, Strap, Dera
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050F16.T7 (MSMg01no050_f16.b1)MSMg01-050F16.TJ (MSMg01no050_f16.g1)
ACCAG279458AG279459
length1,1941,200
length of high quality
(start - end)		797 (37 - 833)627 (74 - 700)
definitionCHROMAT_FILE: MSMg01no050_f16.b1 PHD_FILE: MSMg01no050_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:33 2005CHROMAT_FILE: MSMg01no050_f16.g1 PHD_FILE: MSMg01no050_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,850,196 - 136,850,642)(136,826,493 - 136,827,119)
sequence
CGGGTCTNTNNNNACATTGGGCGCTAAGACTCCTATGGGAGAGGATCCGC
GGAATTCCCTGTTGCAGTGGGACCTGTACGCCATCAGACTGTGTCTGGGC
CATGGACAGAGATCCCCATAACAGAGGAAGCTGTGGGAAGGAGAGGAGGT
ATGCTGTGGGGAGAAATTAATAGGAAGCGGGCAATGGCTAAGGAGTCTCC
AGGGATGGAGGAAGAGCCACAGTGGCAAGTTCATCAGGAAAGGGGCTCGG
TGCAGAAAATCACATTTCACAAACAAACTTTGAGCACCCACCCAAGAGCT
CGAATGAAAGACACTAATGCACCACCAGATAATTTTGATATGCCTTGACT
GAGCATTTCTAATCCTCCCCGAGGCTAGCATACATTTCCCTCTGGTATTC
CTGGCTTAACACCTGAATCTATGTTTTCTCTTCACTGTCCTATTGTCTTT
TGGGCAGCCCTCCCCCCACATAGGGCTTCTTTCCCTTTCCACCTGCATTG
TTGGATGGTTTTCTTCTGTAGCTCTTAAATCTGGTCCCCCTCGGCTGGAG
AGATGGCTCAGCGATTAAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGT
TCAATTCCCAGCACCCACACCGTGGCTCACCGCCATCTGTAATGGGATCT
GATGCCCTCTTCTGGTGTGTCTGAACATAGCTATCGTGTACTCATATATA
TAAAATAAAACGAATCTTTTAAAAAAAATCTGGTCCCTCTCCCTCCAAGT
CATGGTGATTCTCTCTTCTCTCCCCCTCCTCTCCCCCTCTCTTCCCCCCT
CTCTCCCTCTCTCTCTTCTCTTATTTGAGCAATCTAACAGTCCTGCCTCC
ATCTTTCTGCCCAGCCCTCAACTGTATTGCAATACTTTACTATCAATCAA
AACCCGCTGGGACCAGGGACTCCCCCGCCCCAGACCAAGGGGAGGTTGGC
CTTTGGGAAGTCCCATTTAAAACCAAGCATTAAAACCCATCCCCCCCCCC
CCACCCAACCCCTGTTTACTTTACCCTTTTCTAAAACTAACCCGGGTCTT
TCTTAGCAGAATTAAAAACCTAACCCCGGAAAGTGGGACGGGGTCCCTGA
CCCCCCCCTATTTTCCTCCCTACCAAAGAACTTTTTTTTTAAAAATGTCG
GAAAAAACGTGTAAAAATTTTGTGTGGCCTAAGGGGCCCTTTGT

TTTTTNGAAGATTGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTCCTGCTTTCCCTGTGACAATAC
CATTCCCATCAAAACTAATTTTGTAGACATCAACTTTAATCATGCGATCT
GTTTGTTCCTCTGCGGTGCTGGCCCTCCACAGCAAGTCTCACACTAGGTA
GGCAAGGCAACCCCTCTGCCATTGCACTTATCACCCACTGCAAGTCAGTC
ATATATGTGCATATACAGTGTGTATTACCGTGTGTCTGTGTGTGTTGTGC
ATGCATCTCTCTCTGCATGTATGTGTAGCTGTGTATATGGAGGCTAGAGT
ATGATTTTGAATGTCTCTCTCAATCGCTCTTCATGTTATTTCTTGAGACA
GGGTCTCTCACTGAACCTGTAGCTTGCCAATTTTGTCTAAGTGGCTGACC
AGCACACTCTAATGATCCTCCTGTCGCTGCCTCCCTACCTCTGACATTAC
CACTGCGCCTGGTGTTTTATGTGGGTTCTAGGAGATCCAGCCTAGGTCCT
CATGCTTGTGTGGTGAACCCTTTAATGACTGAGCTATTTCCTTACCTCCT
AATGATTGTTACACAGAGGCCTTGGGCCAACTTGTGAAAAGGCGTGGACT
CTACATTGCAAAGGGCCCAGACTGACCCAACTGAATAAAGAGAAAAAAGA
CTGGCAATAGAAAAGAAGTTAGGGAGAAAGAGAATAGTCGACCTTTGTGG
GCTCAGTGTTTATGGTGAGGTTTAGATAGAGTTTAAGTTATAGCAGACGA
ACACTTTTAAGATGTCCTTAGATGTACTGACGAGACGAAGACCAAATCGC
TCCTTTGGGTATTAACAGGATTGTTTGAGATTACTAATTATCACTTGAAA
AACACCTGCAGTTATTTGAAGTTTTCACAATTCATTTTGCTCTGAACAGT
ACTTGTTTTTCCTAACTCAGATAAACATAAATTCCGAATTCATCTGGTCA
CCCCAAACTCATGGTTTGGTATTTAAATCATTAATTAACGAAGGTCCTCT
TTTCCTTAACCCAAAAGAAGGTGCCTACCCAAAGGGAAGGGGTGACGGGC
CACTCCCTCATGAACCACCCGTGTTATTGTATAAAAGTCCACCTCCCTCT
CATAGCGTTAATTTTTTCCCCACTTTTATAAATAATATTTTTCTTAAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_f16.b1 MSMg01no050_f16.b1 CHROMAT_FILE:
MSMg01no050_f16.b1 PHD_FILE: MSMg01no050_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:33 2005
         (797 letters)



>mm_chr6_136850196_136851392
          Length = 1197

 Score =  833 bits (431), Expect = 0.0
 Identities = 443/447 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattccctgttgcagtgggacctgtacgccatcagactgtgtctgggccatggacagag 75
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 447 gaattccctgttgcagtgggacatggacgccatcagactgtgtctgggccatggacagag 388

                                                                       
Query: 76  atccccataacagaggaagctgtgggaaggagaggaggtatgctgtggggagaaattaat 135
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atccacagaacagaggaagctgtgggaaggagaggaggtatgctgtggggagaaattaat 328

                                                                       
Query: 136 aggaagcgggcaatggctaaggagtctccagggatggaggaagagccacagtggcaagtt 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggaagcgggcaatggctaaggagtctccagggatggaggaagagccacagtggcaagtt 268

                                                                       
Query: 196 catcaggaaaggggctcggtgcagaaaatcacatttcacaaacaaactttgagcacccac 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 catcaggaaaggggctcggtgcagaaaatcacatttcacaaacaaactttgagcacccac 208

                                                                       
Query: 256 ccaagagctcgaatgaaagacactaatgcaccaccagataattttgatatgccttgactg 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ccaagagctcgaatgaaagacactaatgcaccaccagataattttgatatgccttgactg 148

                                                                       
Query: 316 agcatttctaatcctccccgaggctagcatacatttccctctggtattcctggcttaaca 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 agcatttctaatcctccccgaggctagcatacatttccctctggtattcctggcttaaca 88

                                                                       
Query: 376 cctgaatctatgttttctcttcactgtcctattgtcttttgggcagccctccccccacat 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  cctgaatctatgttttctcttcactgtcctattgtcttttgggcagccctccccccacat 28

                                      
Query: 436 agggcttctttccctttccacctgcat 462
           |||||||||||||||||||||||||||
Sbjct: 27  agggcttctttccctttccacctgcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 797
Length of database: 1197
Length adjustment: 10
Effective length of query: 787
Effective length of database: 1187
Effective search space:   934169
Effective search space used:   934169
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no050_f16.g1 MSMg01no050_f16.g1 CHROMAT_FILE:
MSMg01no050_f16.g1 PHD_FILE: MSMg01no050_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:33 2005
         (627 letters)



>mm_chr6_136826293_136827319
          Length = 1027

 Score = 1205 bits (623), Expect = 0.0
 Identities = 626/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttcctgctttccctgtgacaataccattcccatcaaaactaattttgtagacatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttcctgctttccctgtgacaataccattcccatcaaaactaattttgtagacatcaa 260

                                                                       
Query: 61  ctttaatcatgcgatctgtttgttcctctgcggtgctggccctccacagcaagtctcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttaatcatgcgatctgtttgttcctctgcggtgctggccctccacagcaagtctcaca 320

                                                                       
Query: 121 ctaggtaggcaaggcaacccctctgccattgcacttatcacccactgcaagtcagtcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggtaggcaaggcaacccctctgccattgcacttatcacccactgcaagtcagtcata 380

                                                                       
Query: 181 tatgtgcatatacagtgtgtattaccgtgtgtctgtgtgtgttgtgcatgcatctctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtgcatatacagtgtgtattaccgtgtgtctgtgtgtgttgtgcatgcatctctctc 440

                                                                       
Query: 241 tgcatgtatgtgtagctgtgtatatggaggctagagtatgattttgaatgtctctctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatgtatgtgtagctgtgtatatggaggctagagtatgattttgaatgtctctctcaa 500

                                                                       
Query: 301 tcgctcttcatgttatttcttgagacagggtctctcactgaacctgtagcttgccaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcgctcttcatgttatttcttgagacagggtctctcactgaacctgtagcttgccaattt 560

                                                                       
Query: 361 tgtctaagtggctgaccagcacactctaatgatcctcctgtcgctgcctccctacctctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtctaagtggctgaccagcacactctaatgatcctcctgtcgctgcctccctacctctg 620

                                                                       
Query: 421 acattaccactgcgcctggtgttttatgtgggttctaggagatccagcctaggtcctcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattaccactgcgcctggtgttttatgtgggttctaggagatccagcctaggtcctcat 680

                                                                       
Query: 481 gcttgtgtggtgaaccctttaatgactgagctatttccttacctcctaatgattgttaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcttgtgtggtgaaccctttaatgactgagctatttccttacctcctaatgattgttaca 740

                                                                       
Query: 541 cagaggccttgggccaacttgtgaaaaggcgtggactctacattgcaaagggcccagact 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagagggcttgggccaacttgtgaaaaggcgtggactctacattgcaaagggcccagact 800

                                      
Query: 601 gacccaactgaataaagagaaaaaaga 627
           |||||||||||||||||||||||||||
Sbjct: 801 gacccaactgaataaagagaaaaaaga 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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