BAC Information

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BAC

Clone NameMSMg01-051D23
Chromosome6 (Build37)
Map Location 148,628,883 - 148,629,026
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984
Downstream geneLOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051D23.T7 (MSMg01no051_d23.b1)MSMg01-051D23.TJ (MSMg01no051_d23.g1)
ACCAG280073AG280074
length1,2481,379
length of high quality
(start - end)
206 (120 - 325)144 (130 - 273)
definitionCHROMAT_FILE: MSMg01no051_d23.b1 PHD_FILE: MSMg01no051_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:39 2005CHROMAT_FILE: MSMg01no051_d23.g1 PHD_FILE: MSMg01no051_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCCGCGCACTCGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTTCCCCCCTTTCCCTTTATAAGATTAAAAATTATATTCAAATAC
TATCCCCTTTCCTGGATTCCCTTCCAGACCCCCCCTATCCCATCCCCCCT
TCCTCTGCTTCTATGAGTGTGCTCCCCTACCCACCTACCTGTGGGGAGCC
GCCCTCACATTCGCCGTTGCAAGATGGCGCTGACATCCTGTGTTCTAAGT
GGTAAACAAATAATCTGTGCATGTGCCAAGGGTAGTTCTCCACCCCATGT
GCTCTGCCTTCCCCGTGACGACAACTCGTCCGATGGGCTGTAGTCAATCA
GGGAGTGACACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGGATGTTT
TTTTGTCACTTTCTCTCTTGCTCTTGCTCTCTGGCTCCTAAAGATGCAAT
TTTTTTTTCTCCCGCTCTTGTTCTCTTGCCCTCTGGCTACTAAAGATGTA
AGCATTTAGAGCTCTTGCTCTTGCCCTCCTGATCTCTGGCTCCTGAACAT
GTTAGCATTATAGCTTTGCTGCATAATATTCCGGTTTGTTGCGTTCTTCC
TGGTTGGTTGCGAGAACTCTTGTCATCACTCCCTTTTTCCTCCTCTTCGT
TCTGTCTTTCCCCTATCTCTGTTCCCTTCTCTTCTTCTTTTGACCTTTTT
TTTTTTTCTTCTCTTTTGATGCCTTTTCTTGCCTCTACTTCTGCTCATTA
TGTCTTTTACTCTCTCTGTCTTTTCTTTCCTGTCTTTTGCTTTCTTTTCT
TTATTCCCTTTTCTTCTTCTTCTTTTTTTTCTTTTCTTTTTTTTCTCTTC
TCCCTTTTCTCTTTTCCTCTCTTCCTTCCCTTTTTTCTTTTTCTCTTCTT
TCCTCTTTTCTTTCTCTTTTCTTTTTTCTTTCCTTTTCTCTTTTTTTTTT
TCCTCCTTTCTTCTTTCCTTCTTTTCTCTCTTACTTTTTTTTTTCTTCTC
ATTCTTTCCTCTTCTTCTTTCTCCTTCCCTTCTCTTCTTTCTTTCTCTTT
TCTCTTTTTCTACTTCTCTTACTTCATTTCCTTCTTCTTCTTCTTCTCTT
CCTTCCGCTCCTCCTTCTTCTCTTCTTTTTTTCTTCTCTTCCTCTCTCTT
TCTTCTCTTTCTTCTCTTTTCTTTGTGCTTTTCATCNTACTTCTTATCAT
CCTCTCTTTTTTTCTCTTCTTTCCTTCCTTTCCTTCTTCTTCTTTCCT
TTTTTTAGATAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTTTTAACGCAGGCATGAAATTCTCGTTTCTGGGG
TTTTCCGTTTGAGCTCAGTGCCTCCCCGGAATAGAATATATGTAGGCACA
TCATTGCAGAATTAGAAGAAAGTTTACATTTATTGGCAGGAAAGCAGAAA
AAGTAGCTTCTACAACCTGGAAGACCAAATTTAATATAATTAGTTTAGGT
TTTTGTTCTTAATATTTGCTTGCTATGTTCTTTGCTGAAAGCCAATGTGT
TTGTTCACTTTTCCTCAGTTTATTTTTTCTCCCTCTCTCTTTTTCTCTCT
TTTCTTCTCTCTCTTTCTTTCCCTTTTTTCTTTCATTTTTTTCTTTTTTT
TTTTGATGCTTGTAGTTTTTTTTTTTTCTTTTTTTTTTGTTTTTCTTCCC
TATTTTTTTCTTCCTTTCCCCCTCTCTTTCTTTTCTTGTTTCTTGTTTTT
TTTTTTTTTTCTTTTTTTTCTTCTTTTTTTCTTCTTATCTCTTTTTTTTT
TCTCCTATTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTCTTTTATTT
TTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTAATATTTTTATCTTTTCTT
TCCTTTTCTTTTCTTTGTTTTCTTTTTTTCCTCTTATCTTCTATTTTTTT
TTTTTTTTTTTATTTTTCTTTCTTTTTCTTTTCTTTTTGTTTTCTTCTCC
TTTTTCTCTTTTCTTTTCATTTTTTTCTTTTTTTCTTCTTTTTTTTTTTT
TTTTTTTTTTTTCTTCTTTATTTTCTTTTTTTACTTTTTTCTTTTTTTTC
TTTTTTTCATTTTTTTTTTTCCGTTTTTCTTTTTTCTTTTCTATTTTACT
TTTTTTTTTTTTTTTTTTAATTTACATTCCTTTTTTTTTTCTTTTTTTCT
TTTTATTTCTTTTTCTTCTTTGTCTTTTTATTTCTCTTTTTTTTTCACTT
TTTTATTATTTTTTATATTGTGCTTTTTTCTCCTCTTATTTTCTCTTTTT
TTCTCCTTCTTTTTCTTTTTCTTCTCTTTTTATTTTATTTTTTTTTTCTT
TTCCTTCTTTCTTTTTTTATTTTTTTTCATTCTTTCTTTTTTCTACTCTT
CTTACTTTTTTATTTTATCTTTTTTTTATTTTCATTATTTTATTTTTTCC
TTTCTGTTTGTCATCGTTATTTTTTCTTGTTCTTTTTCTTTTCTTTATTC
TCTTTATTTTTTATATTACTTTTCTTCTTTTTTATTTTTTCTCTTGTTTT
CTTATTTTATTCCCCCGTTGTATCTTTTGTTTTATATATTTTTATTACCC
CATTATTTTTGTTATTTCTTCTTCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_d23.g1 MSMg01no051_d23.g1 CHROMAT_FILE:
MSMg01no051_d23.g1 PHD_FILE: MSMg01no051_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:40 2005
         (144 letters)



>mm_chr6_148628683_148629226
          Length = 544

 Score =  263 bits (136), Expect = 3e-75
 Identities = 142/144 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagaatatatgtaggcacatcattgcagaattagaagaaagtttacatttattggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aatagaatatatgtaggcacatcattgcagaattagaagaaagtttacatttattggcag 285

                                                                       
Query: 61  gaaagcagaaaaagtagcttctacaacctggaagaccaaatttaatataattagtttagg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gaaagcagaaaaagtagcttcaacaacctggaagaccaaatttaatataattagtttagg 225

                                   
Query: 121 tttttgttcttaatatttgcttgc 144
           |||||||| |||||||||||||||
Sbjct: 224 tttttgtttttaatatttgcttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)