BAC Information

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BAC

Clone NameMSMg01-053A22
Chromosome6 (Build37)
Map Location 48,475,297 - 48,475,809
singlet/doubletsinglet
Overlap genenone
Upstream geneCul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005
Downstream geneAtp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053A22.T7 (MSMg01no053_a22.b1)MSMg01-053A22.TJ (MSMg01no053_a22.g1)
ACCAG281382AG281383
length698892
length of high quality
(start - end)
516 (42 - 557)---
definitionCHROMAT_FILE: MSMg01no053_a22.b1 PHD_FILE: MSMg01no053_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:51 2005CHROMAT_FILE: MSMg01no053_a22.g1 PHD_FILE: MSMg01no053_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAAT
TCATAGGTAGACCCGGCTGTCGTGGAACTTACAGAGATCCACCCGCCAGT
GCTCAGATTAAAGGAGTATGCTACCACATCCAACAAGGTTTTATTTTTAT
ATAGAAATGAACTTTAAAAATAATAGCTTAAGAAAACCCTCCTATATGAA
AACAAGCAGGGGAAAGTACTGGAAGGTCTAGAGATACTACAGGGAACATG
GAACCTTAAAACAGGAGCTAAGAATTTATCCTGAGGGTTGGAGTAGGGCT
CAGCAGTTAAGATCACTTCCTGCTCTTCGAGAGGACCAAGTTCAGTTTCC
AGCACCCACACTGGTGTTTCACAACTGCTCCAAAGTCCAGCTCCAGGAGA
TATGACCATCTTTTAATATCTATGGGCACCACACACACATGGCAGACATG
CACAAACATACACATAAATAAAAATAAATCTTTCTTAAAAGCATTTACCT
ATGTGTATGAGTGTCCGGTCTGCATGTATGGCTGTGTGCCATGTGTGTAC
CTGGTGTCCTCACAGGCCCTAGGATTTAGAGTTCCACAAGTGTGGGCCAC
CATGTGGGTGCCAGGAATCAAACCCAAGTCCTCTGGAAGAACAGCAAATG
GTCTTAATCCTGAGTCCTCTCTTCGGCCCCTATGTAATACTTTTAAAA
CATATATATTGGGAAGGAATGAAAGAGAGACTGGTCTTCAATAGAGGGGG
GGGATNAATAGATAGGATTTGCGCAAAAGGGGGGGTTGAAAAGAGAGAAG
AGGATATTTGTTGGGTTATGTATATTTGTTGTTGTTCTCCCGTTAATTTG
TCATATATGATATAGTAGCCGGATAAGACATACAATTTATTATGTGGATT
ATATGCGTGAGAAGAAGTAGGGTTCGGCTTAAAGCAATAGTATATATTAA
TATTAACAGTGAGGTATTGTTGAAACGAGCACCACCTTGTGAAGCTTTTT
CGAGGGACGAGAGGCAGCGCGGTTAGCTTGCGGGTTTTTTTTCTACTGGC
CAGCTTATATTCTTACGATCAAACTTTTTTTTTTTTTCCTCTCCTGTTAT
CATCTTTTTCTTGGAAGGGGAGGCGTATTTTCTCCTCCCCCCCTCCACCC
AGATATGGTTTATATCGATGGTGAAAGGGAGGGGGCGGTGGGCCCCCCTC
TGTTTGTGATCTTTTATGTTGTTGGCCTATGGCGTGGTGATATGTTTTAC
ACCTTTACATTCTTTACTCGAGAATCGTTCGTTCCATCGATCGTTTATCG
ACCACCCATTATAGTCTCAGTTGTGTTACATAGTTATTACTTTCAGCACC
GCGGAGGGAGGTTGGAGTGTTGTTTCCGTTCTTCCGGCTCCCGTACTTTC
TTTGTGTTTTCCCCACACTTTGTGTATATCTTTGGCTCATCATGCTAGTA
ATCGTGCTATACCGATGCGCTCAGATACTGACTCAGGCGTGAAAGGTGTA
GGACAATAACGTGATCGATGGTGTGATCGGGGTTTGTGTCTTGCCTTGTT
ACCGTATTGCGGGATTTGGCGAGGGTGTGGTGGTGCGTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_a22.b1 MSMg01no053_a22.b1 CHROMAT_FILE:
MSMg01no053_a22.b1 PHD_FILE: MSMg01no053_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:51 2005
         (516 letters)



>mm_chr6_48475277_48476192
          Length = 916

 Score =  938 bits (485), Expect = 0.0
 Identities = 506/513 (98%), Gaps = 1/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattc-ataggtagacccggctgtcgtggaacttacagagatccacccgccagtgctc 63
           ||||||| ||||||||||  | ||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggaattcaataggtagactagactgtcgtggaacttacagagatccacccgccagtgctc 474

                                                                       
Query: 64  agattaaaggagtatgctaccacatccaacaaggttttatttttatatagaaatgaactt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agattaaaggagtatgctaccacatccaacaaggttttatttttatatagaaatgaactt 414

                                                                       
Query: 124 taaaaataatagcttaagaaaaccctcctatatgaaaacaagcaggggaaagtactggaa 183
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 413 taaaaataatagcttaagaaaaccctcctctatgaaaacaagcaggggaaagtactggaa 354

                                                                       
Query: 184 ggtctagagatactacagggaacatggaaccttaaaacaggagctaagaatttatcctga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggtctagagatactacagggaacatggaaccttaaaacaggagctaagaatttatcctga 294

                                                                       
Query: 244 gggttggagtagggctcagcagttaagatcacttcctgctcttcgagaggaccaagttca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gggttggagtagggctcagcagttaagatcacttcctgctcttcgagaggaccaagttca 234

                                                                       
Query: 304 gtttccagcacccacactggtgtttcacaactgctccaaagtccagctccaggagatatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gtttccagcacccacactggtgtttcacaactgctccaaagtccagctccaggagatatg 174

                                                                       
Query: 364 accatcttttaatatctatgggcaccacacacacatggcagacatgcacaaacatacaca 423
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 accatcttttaatctctatgggcaccacacacacatggcagacatgcacaaacatacaca 114

                                                                       
Query: 424 taaataaaaataaatctttcttaaaagcatttacctatgtgtatgagtgtccggtctgca 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 113 taaataaaaataaatctttcttaaaagcatttacctatgtgtatgagtgtcctgtctgca 54

                                            
Query: 484 tgtatggctgtgtgccatgtgtgtacctggtgt 516
           |||||||||||||||||||||||||||||||||
Sbjct: 53  tgtatggctgtgtgccatgtgtgtacctggtgt 21


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)