BAC Information

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BAC

Clone NameMSMg01-053B16
Chromosome6 (Build37)
Map Location 133,647,214 - 133,647,642
singlet/doubletsinglet
Overlap genenone
Upstream geneTas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649
Downstream geneLOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053B16.T7 (MSMg01no053_b16.b1)MSMg01-053B16.TJ (MSMg01no053_b16.g1)
ACCAG281417AG281418
length698704
length of high quality
(start - end)
429 (69 - 497)447 (81 - 527)
definitionCHROMAT_FILE: MSMg01no053_b16.b1 PHD_FILE: MSMg01no053_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:55 2005CHROMAT_FILE: MSMg01no053_b16.g1 PHD_FILE: MSMg01no053_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACACCCCCAAGCCCCTTACCCCATAAAAACCCCTAGCTTTCG
AGTCTCGTGGCCGACATCCATTATCTCCTATGTGGGATGCATGTTGGTCC
GGAGCTTCATCATTAAAGGTCCTCATGAATTTACATCAAGATGGTCCTTC
GTGATTTTTTTGGGTGCACGCCGAATCGGGAATTGGGTGGGGGTTTCCCC
ACTAGGTTCTAACAAAAAGAGGGTAGGTTCAATCAAACTCCATTACATAT
CTTTATTGACTTCTTGAACAGGAAACATATACACTTGATAAATAAAGAGT
TGCATTAAATATTATAATATTAAAGCAGAACAAAATGTCTAAGATGTGCA
GAACTTCAACCTGATACCTACCCATTCTTCATCCCCACTTTCCTTCCTAA
TAGTTTTGCTTACCCACTCTTCTGTAACCTGATCTCTGTTTCCATTGATA
TCAGATGTGATATTTTTTCTTCATGATACAGTACACTCTGCACTCATTGT
TGACATTGATGGAATTCACGGTAATGTATTTGAGTGAATTGACATTTAAC
CGAAATTCCCACTGCGTTGTACGACCTAGACGTAAGGTCAAGACTGGTTC
TCTTGTATACTTCTTCTTCCATGATTACCATTTTGAATCCTATTGCTT
NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACACCTGACCAAAAAACA
AAACAAAACAAAACAAAACAAAAAAACAAAAACAAAAACAAAAGAGTACT
TCAGCAAAGTGGTTGGATATAAAATTAACTCAAGCAAATCAGAATACTTC
CTTGACCCAAAGAATAAACAGTCTGAGAAAGAAATTAGGAAATCAATGCA
CTTGACAATAGTCACAAATAAGAGAAAAAGCAAAGTGGAAATATGCTTAT
GGTAAATTGTCTTGTTGTGATTCTATCCAAGCAAGTAAAAGATCTGTAGA
ACAAGAACTTCGGGTCTCTGAAGAAAAAAAAAATGAAGAAGAGCACAGAA
GATGGAAAGATCTCACATGTTCATAGATCAGTAGGATTAATATAATAAAA
ATCGCCATCTTGGTACCTTCCGGTCCACTCCAGCACCAGGGTGCCTTACC
TGTGGGGTCTCCGGACACCCGCAAGGACCCACACAGGATTCCCCACGGGA
TCCTAATACCTCTGGTGAGTGCAACACAGCATCTGCTCCTATTCATTCGT
GGGGGACCTGAGATTGCATTAACTAGGGAAGCAGATAACCTGGCCCGAAC
AGGGGTTCAAGTCCCTTCTGGTCCATTCCAACACCAGCGCGCGTTGCCTT
GCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_b16.b1 MSMg01no053_b16.b1 CHROMAT_FILE:
MSMg01no053_b16.b1 PHD_FILE: MSMg01no053_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:55 2005
         (429 letters)



>mm_chr6_133647014_133647842
          Length = 829

 Score =  783 bits (405), Expect = 0.0
 Identities = 423/429 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccccttaccccataaaaacccctagctttcgagtctcgtggccgacatccattatctcc 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gccccttaccccataaaaacccctagctttcgagtctcctggccgacatccattatctcc 260

                                                                       
Query: 61  tatgtgggatgcatgttggtccggagcttcatcattaaaggtcctcatgaatttacatca 120
           |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tatgtgggatgcatgtcggtctggagcttcatcattaaacgtcctcatgaatttacatca 320

                                                                       
Query: 121 agatggtccttcgtgatttttttgggtgcacgccgaatcgggaattgggtgggggtttcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 321 agatggtccttcgtgatttttttgggtgcacgccgaatcgggaattgggtgggggggtcc 380

                                                                       
Query: 181 ccactaggttctaacaaaaagagggtaggttcaatcaaactccattacatatctttattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccactaggttctaacaaaaagagggtaggttcaatcaaactccattacatatctttattg 440

                                                                       
Query: 241 acttcttgaacaggaaacatatacacttgataaataaagagttgcattaaatattataat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttcttgaacaggaaacatatacacttgataaataaagagttgcattaaatattataat 500

                                                                       
Query: 301 attaaagcagaacaaaatgtctaagatgtgcagaacttcaacctgatacctacccattct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaaagcagaacaaaatgtctaagatgtgcagaacttcaacctgatacctacccattct 560

                                                                       
Query: 361 tcatccccactttccttcctaatagttttgcttacccactcttctgtaacctgatctctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatccccactttccttcctaatagttttgcttacccactcttctgtaacctgatctctg 620

                    
Query: 421 tttccattg 429
           |||||||||
Sbjct: 621 tttccattg 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)