BAC Information

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BAC

Clone NameMSMg01-054A04
Chromosome6 (Build37)
Map Location 12,533,925 - 12,534,082
singlet/doubletsinglet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054A04.T7 (MSMg01no054_a04.b1)MSMg01-054A04.TJ (MSMg01no054_a04.g1)
ACCAG282063AG282064
length680778
length of high quality
(start - end)
546 (38 - 583)97 (68 - 164)
definitionCHROMAT_FILE: MSMg01no054_a04.b1 PHD_FILE: MSMg01no054_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:06 2005CHROMAT_FILE: MSMg01no054_a04.g1 PHD_FILE: MSMg01no054_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCCAGAGGATCCGCGGAATTCTATCAAATCTCTCCTATACTTGTTGT
GAAAATTAATTTGATTTCTTTATTATTTCAACACACATATATATTATATA
TGTGCTATATTTTTCCAACTTGACAATTTTGGTGTATTATACTATCAAAA
AATATGGTGACTCTGGCAATGTACTTCCTTGTAAAAATGTAAGTAGGGCA
TATATCCAGAAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAGCCCAGAT
GTCCTTCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAACAATGAATTCATGAAATTCTTAGGCAA
ATGGAAGGAACTAGAAAATACCATCCTGAGTGAGGTAACCCAGTCACAAA
AGAACACAAATGGTATGTACTCACTGATAAATGGATATTAGGAAAAAAAG
CTCAGAATACCCATGATACAACTTACAGACCATATGAAGCTCAAGAAAAA
GGAATACCCAAGTATGATCTTTCAGCCCTACTTAAAAAGGGGAACAATAT
ACCGGAGGTACAGAGAGGAAGGGATCTTGTAGGAAGAGAAGAAGGGGGAC
AGACCAAGGACGACACAGGTGTGGTAAGAN
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTGGAATTCTTTGTGATACTGGAGCAATATGGAGGAT
ACATATTTGAATCAACAGCACTATTTGCCTGGAGGTAGGGTGAGGGAGAA
GTTGGTAAGCTTGGAGGTGGGATGAGAAGATGTTTTCCCCCCCCTCCCCC
CTTCCCCCCTTTCTCCTCCNTCCTCCCCCCCCCCCCCCCCCCCTCCCTCC
CCTTTCCCCCTTTCTCCTCCCCCCCCCCCTCTCCCCTCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCTCTCTCCTCCCCCCCCCTCCCCATTCCCCCCC
CCCCCCCCCCCCCCTGTCCCCCTCCCTCCCCCCCCCCCCCTCTCCCCCCC
TCTTCCTCCCCCTCTCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCTCCTCCCCTCCCTTTCTTTTTCCCCCCCCCCTCCCCCCCCCCCC
CCCCCCCCCCCCTCCTCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCTTCCCTCCCCCCCCCCCCGCCACCTCTCCCCTTCTCCCTT
TCTTCCCCTCCCCCCCCCCCCCCCTCCTCCCCCTCTCTTCCCCTCCCCCC
TCACCCCCCCCTCCCCCCCCCCCCTCTTCCCCCCCCCCTCCCCTCCCCCC
CCCTCTATCCTCTTCCTTGCCCCCCCCCCCCCTTCCTCCCTCCCCTCCCA
CTCCCATTTCTTTTCTTTCCCCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_a04.b1 MSMg01no054_a04.b1 CHROMAT_FILE:
MSMg01no054_a04.b1 PHD_FILE: MSMg01no054_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:06 2005
         (546 letters)



>mm_chr6_12533719_12534664
          Length = 946

 Score =  288 bits (149), Expect = 6e-82
 Identities = 157/161 (97%), Gaps = 3/161 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatacttgttgtgaaaattaatttgatttctttattatttcaacacacatatatattat 60
           ||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 364 ctatac---ttgtgaaaattaatttgatttctttattatttcaacacacacatatattat 308

                                                                       
Query: 61  atatgtgctatatttttccaacttgacaattttggtgtattatactatcaaaaaatatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atatgtgctatatttttccaacttgacaattttggtgtattatactatcaaaaaatatgg 248

                                                    
Query: 121 tgactctggcaatgtacttccttgtaaaaatgtaagtaggg 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgactctggcaatgtacttccttgtaaaaatgtaagtaggg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)