BAC Information

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BAC

Clone NameMSMg01-054B01
Chromosome6 (Build37)
Map Location 86,948,104 - 86,948,667
singlet/doubletsinglet
Overlap geneAak1, LOC100043555
Upstream geneFigla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik
Downstream geneNfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054B01.T7 (MSMg01no054_b01.b1)MSMg01-054B01.TJ (MSMg01no054_b01.g1)
ACCAG282103AG282104
length765707
length of high quality
(start - end)
324 (131 - 454)564 (76 - 639)
definitionCHROMAT_FILE: MSMg01no054_b01.b1 PHD_FILE: MSMg01no054_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:10 2005CHROMAT_FILE: MSMg01no054_b01.g1 PHD_FILE: MSMg01no054_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTNNTTNTTTTNNTTTTTTTTAATTTCTCTCCTCTTACTTATTTT
CTCCCNNGATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAAA
AATCCGCNGGAATCACTCTGTTTTCAAGACTGGCCTCAAACTCAGATATT
CACTGGCCTCTGCCTCCTAAGTACTGGGACTAAAGATGAGCCCCACTGCC
ACTACCAGCGCCACCACCACCACCGCCACCACCCAGCTTAGTTTCATGAA
AATGTTGAGGTAGCAGAGCTGATAGTCATAGAGCAAGGTGCTTTTCAGCT
ATACCGTGGGAACATCAGGTAGGCTGGTTGCAGCACGGCTGGGAGGGGCT
GCAGATGTTATGTGATGACATTTTTAGCTTTTAAGTTGCTGGAAGCTAAT
GGTTTGCTGAGTGAAACAAACATTCCAGTGATTTTCTCACAAGTTCTTTA
GGTCAGATAAGAAGGTGGGCAATGAATGCCCACGGAGGGGATTAAAGGTA
GCCCATAGCAATCTGGCTCTGGATATGGACACTCGGAACTCTGACCAGTC
AGGAAGCTCTAATCAGTCAATCAGTCCTGCAGAATCTTTGACATAGGTGT
GGCTTTTCTTCTGGGTACTTCACTTCAGGAGGACATAGATTTTGCCGATT
ATAGTAATCAAAATTTCTAGGTCTAACATATGTAAGGGACTTAGTAAACT
TTTGTTAGCCCCGTCTCGTGAACCGACAGTAATCTCAGTAACCGTTCCGC
GGAGTTTGGTTTTTG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTCTGTACCACCCGAGTGCC
CTGTTTGCAGCGGTACGCTACTGTGCCTAGCTTCTAGCCTTTCTTCCATC
ACTAATCCAGCGCGACACACAGCTCTCCACACTTCCGCAGGCAAGTGGAA
GCAGTGTCTGTGAGAAGCCATGAGTGCACACCTGGGTTTGCTGCAACTCT
TTCCTCAGTGGATGCCTCATGGAGTCAGGGTTTATTCTAAGGCAGTAAAA
ATAAAGGACATGAAAACCACTAGGAATGGTCAGAGCCGTCCAGATATAAA
AACACACTCCTGAACACGCAGCCAGTCACCTGTCTGCTCTACTGGAACAT
CTGAAAGGCACAGATCATTTAAAGATTTGCAAGGACAACTGACCAACTCT
TTTCCATTCTCAGTTTACTTCCGGGTCTCAGGTCTGTACCCACTTAAGAG
GCAGTAGAGGTGTATGGGAAGGGTTTGGGAGAAATAACAGGCAAACTTAG
CTTGTGGCTTGGGCTCCTGATTAATGAATTTCACAATAATGGTACCCAGG
CAGGAGTCCCTGTGGCTGGACCTCTGAAGATTCTCTTCCCCTGTTGCCAG
GGAAACACCAAGACTGATGACTTTTTTGGCTGGAAGGAGAAGGTGTTGAG
ATATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_b01.g1 MSMg01no054_b01.g1 CHROMAT_FILE:
MSMg01no054_b01.g1 PHD_FILE: MSMg01no054_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:10 2005
         (564 letters)



>mm_chr6_86947904_86948867
          Length = 964

 Score = 1067 bits (552), Expect = 0.0
 Identities = 561/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctttctgtaccacccgagtgccctgtttgcagcggtacgctactgtgcctagcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cttctttctgtaccacccgagtgccctgtttgcagcggtacgctactgtgcctagcttct 705

                                                                       
Query: 61  agcctttcttccatcactaatccagcgcgacacacagctctccacacttccgcaggcaag 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 704 agcctttcttccatcactaatccagcgcaacacacagctctccacacttccgcaggcaag 645

                                                                       
Query: 121 tggaagcagtgtctgtgagaagccatgagtgcacacctgggtttgctgcaactctttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tggaagcagtgtctgtgagaagccatgagtgcacacctgggtttgctgcaactctttcct 585

                                                                       
Query: 181 cagtggatgcctcatggagtcagggtttattctaaggcagtaaaaataaaggacatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cagtggatgcctcatggagtcagggtttattctaaggcagtaaaaataaaggacatgaaa 525

                                                                       
Query: 241 accactaggaatggtcagagccgtccagatataaaaacacactcctgaacacgcagccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 accactaggaatggtcagagccgtccagatataaaaacacactcctgaacacgcagccag 465

                                                                       
Query: 301 tcacctgtctgctctactggaacatctgaaaggcacagatcatttaaagatttgcaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tcacctgtctgctctactggaacatctgaaaggcacagatcatttaaagatttgcaagga 405

                                                                       
Query: 361 caactgaccaactcttttccattctcagtttacttccgggtctcaggtctgtacccactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 caactgaccaactcttttccattctcagtttacttccgggtctcaggtctgtacccactt 345

                                                                       
Query: 421 aagaggcagtagaggtgtatgggaagggtttgggagaaataacaggcaaacttagcttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aagaggcagtagaggtgtatgggaagggtttgggagaaataacaggcaaacttagcttgt 285

                                                                       
Query: 481 ggcttgggctcctgattaatgaatttcacaataatggtacccaggcaggagtccctgtgg 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 284 ggcttgggctcctgattaatgaatttcacaacaatggtacccaggcaggagtccccgtgg 225

                                   
Query: 541 ctggacctctgaagattctcttcc 564
           ||||||||||||||||||||||||
Sbjct: 224 ctggacctctgaagattctcttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)