BAC Information

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BAC

Clone NameMSMg01-054E08
Chromosome6 (Build37)
Map Location 8,828,203 - 8,828,445
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054E08.T7 (MSMg01no054_e08.b1)MSMg01-054E08.TJ (MSMg01no054_e08.g1)
ACCAG282254AG282255
length783710
length of high quality
(start - end)
243 (130 - 372)512 (75 - 586)
definitionCHROMAT_FILE: MSMg01no054_e08.b1 PHD_FILE: MSMg01no054_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:25 2005CHROMAT_FILE: MSMg01no054_e08.g1 PHD_FILE: MSMg01no054_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTGTTTGTGGGTTTGTTTTATCTCNNCCCANACACAACCTCCCC
CCGCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGA
TCCGCGGAATTCTCCTGTTTCTAAAAGAGCTTTTTATAGATAATTGAGCC
TGTGAATGAAAGCAAGACATTTGAAGGACATACAGCTGATTCTTTTTCCA
GCATAATATAGCCCTGGCCTCCTTCCTAGAACCAGTAACATATGAGGCAA
GTGACAGCCCTTGATTTCTATCAAAGACCCAAGACTATTCCCTGACAGTT
GGGGGGCAGATCTCCAAGCTGCCTCATCTACTCTACCATCTATTCAGGGC
AAGCAGCCCTTGGATAATAAATGATTAGCTGCTGAAGCCACTAACAAAGA
GAGAATGGATTGATAACTTATCTTTTCCCCAATAAAATCCAGGAGAAATA
TTCATTAAGCCCTTTGTGACCCCCTATACCTAGATCAAAGAAAGAAGGAA
GGGACAGGAAGGCGAGAAAAAGGGAACAAAGAATGAGAGTCATCACCATA
AAGGGGGATATTTTCTACCTCTCAATAAGTAACACTATAAGCACACAAAC
TCCTTAGTTAAAATCACAGAGAGGTTCCGTGTGTATATTTTATTACAGTT
TAGCCTAAGCTGTGTTTTACAGATCCATTACTCATCAAGTGCCCCGCGCC
GAGGTGAAGTACCCGACTACCCCCATTTCTAACTTGGCATACCTGGAAGC
CATGCGTAACCACGAGTTGCTACTAAGCCAATC
CATTGCTGGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAATAATTTAACAGTTTCAGAAACT
CAAATAATTTCCTCTAATGTTGGGATAAGAAAGGTGGAAACATTTTTATT
CAATGTAGGTCTTAAGATCTTAGCGAAGGAAGGAAAGATAAAAACATGAG
GTCTGCAAACAGGAAGAGGTCATGTTATCCCTGTAGACAATGTGACTTTA
TATTTTAGTAACTAAAAGACTCAGTCAGAAAACTTGTGGCAGGATACCAA
ATCACCATTAAAAGATCTGGTAGTTTTTCTATGTAACAGTAATCAACACG
ATGAAGAATAAAGGGAAAAAATGATAATTTTCACAATGGCTTCAAAAATA
AAGTTAAATAGAACATCTACGAGTAAACCAAAACAAAAAAGCGAAAGCCT
TCTATGATGAAAAGTTTAAAGCCATCAAAGAATACACTGAAGAAGACAGT
AGAAGATCAAAAGACTTTCCATGCATATGATTGGTACAACTATTTTTGTA
AAGTTAGCTACATTACTAAAAGGAATTTACAGACTTAATGTAATCCCTAC
CAAAAGTTCAGTGGCATTATTTATAGGTATGAGAAATCAATTATTTTAAA
AAAGCATATTGTAAATAAACAAAATTAATACTGACCCTCCTATGAAGACA
CCATACCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_e08.b1 MSMg01no054_e08.b1 CHROMAT_FILE:
MSMg01no054_e08.b1 PHD_FILE: MSMg01no054_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:25 2005
         (243 letters)



>mm_chr6_8828003_8828645
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttttatagataattgagcctgtgaatgaaagcaagacatttgaaggacatacagctga 60
           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 443 ctttttatagataattgagcctgtgaatgaaaccaagacatttgaaggaaatacagctga 384

                                                                       
Query: 61  ttctttttccagcataatatagccctggcctccttcctagaaccagtaacatatgaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttctttttccagcataatatagccctggcctccttcctagaaccagtaacatatgaggca 324

                                                                       
Query: 121 agtgacagcccttgatttctatcaaagacccaagactattccctgacagttggggggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtgacagcccttgatttctatcaaagacccaagactattccctgacagttggggggcag 264

                                                                       
Query: 181 atctccaagctgcctcatctactctaccatctattcagggcaagcagcccttggataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atctccaagctgcctcatctactctaccatctattcagggcaagcagcccttggataata 204

              
Query: 241 aat 243
           |||
Sbjct: 203 aat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)