BAC Information

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BAC

Clone NameMSMg01-055C18
Chromosome6 (Build37)
Map Location 147,182,422 - 147,341,182
singlet/doubletdoublet
Overlap genePthlh
Upstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641
Downstream geneEG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055C18.T7 (MSMg01no055_c18.b1)MSMg01-055C18.TJ (MSMg01no055_c18.g1)
ACCAG282910AG282911
length697735
length of high quality
(start - end)		641 (45 - 685)540 (75 - 614)
definitionCHROMAT_FILE: MSMg01no055_c18.b1 PHD_FILE: MSMg01no055_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:31 2005CHROMAT_FILE: MSMg01no055_c18.g1 PHD_FILE: MSMg01no055_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,182,422 - 147,183,058)(147,340,643 - 147,341,182)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGTCCTCCGCAAGAGCAACAAGCTTATTCTTAGCCATAGACCCAT
CTCTCCAGCCCCTAAAAGCATTTTAAAAAGCAAACTCCATTAAAGCATTA
AGGGCCTTACAGAATTCAGGGGTTACCAAAACAAATACCTTGTCCAGAAA
TCAACCAAAGGCAATCCCATGAGGAAAAAAGGTGTTTTTTTTGCAAGTGA
ACAAACATAAGAAACAATACAAGGGTAACCAGTTCTCAGTGTACAAGAGA
ACAAGTCTGAGTCCTGGCTTTCTGCCACGTACAAAACGAACCCAAAATAG
CCTTACCATAATCATAAGCGCTAAAAGGCTGAAATTGCTAAACGGAAAGG
TAGGATGGTGTACTTGCTGTCTTGTGTTAGGCAATGGTTTCTTTGAAATG
ACATAAACACCTGAGGGAAAAAAAAGCTAAATTACTCTTCATTAAAAAAA
AAGAGATAAATTCCATTTTACCACTGCCCTTTCATATTGATCAAGCTGAT
TTCCATGCCAAATTTGATGCTGATTTTTACACAGCAAACTCTGGCTCATG
TAATAAAATGCCAGGAACAAACATAAAATGATATAAGAGGCACATTGATT
GCAAAGGGGGTATGTTTGCAAAAAATATCTTTGATGGCAGATCAAGA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAACTACGGGGAGATTCGATACCTTC
TTCTGGCCACAACAGGCACCAGCACTTAGGGACACATACCATCCTCCAAA
GCACACATACACAAACAAAAACAAAACAAGAACAGAGGAAAAATATTGTA
TAGGTGAAAGAAAGTTGCTCAGAAAACGTTTTCCCCCCTTTATTTAAAGA
AATAGTCCTTTATTCTACCCTTAAACTCCTTTTTGAAAGTCTACTGTAGA
GTCCAGCACTGTGAAAGCTGTGGCCATGTGGCTGCTGAAAGTTGGCTTCG
TTTACTTTTGGCTGTGGTTGACGTATGGAAAGGATTTTGTTTTGTTTTGT
TTTGTTTTGTTTGGTTGTTTTGTTTTGTTTTGTTTTTTTCCTACTCTGAA
ACACTGGAGTCTTGGTGAGCCTTTGTTATCACTCCGCATCACAACAGGAG
AGAAGAATCTTAGACACAAAAAGTTTCTTGGAAGAAGAATAAACAGGTTA
CACCAGTTCAAACAAGCCACGGAATTCAGAACTATAATATCTGTGATGTT
ATTAGTAAAGCAGGCACAGTGTGGGGGAAACCCACAATCAAAATGCTTGC
AACAGACCCAGAGCGATACTTAAAGGAGTCTCATTCTCAAACAACGTCGA
TGTTTTCAGCAGGTCTGAATATAGCCGGCATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_c18.b1 MSMg01no055_c18.b1 CHROMAT_FILE:
MSMg01no055_c18.b1 PHD_FILE: MSMg01no055_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:31 2005
         (641 letters)



>mm_chr6_147182218_147183258
          Length = 1041

 Score = 1224 bits (633), Expect = 0.0
 Identities = 636/637 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtcctccgcaagagcaacaagcttattcttagccatagacccatctctccag 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtcctctgcaagagcaacaagcttattcttagccatagacccatctctccag 264

                                                                       
Query: 65  cccctaaaagcattttaaaaagcaaactccattaaagcattaagggccttacagaattca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccctaaaagcattttaaaaagcaaactccattaaagcattaagggccttacagaattca 324

                                                                       
Query: 125 ggggttaccaaaacaaataccttgtccagaaatcaaccaaaggcaatcccatgaggaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggttaccaaaacaaataccttgtccagaaatcaaccaaaggcaatcccatgaggaaaa 384

                                                                       
Query: 185 aaggtgttttttttgcaagtgaacaaacataagaaacaatacaagggtaaccagttctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggtgttttttttgcaagtgaacaaacataagaaacaatacaagggtaaccagttctca 444

                                                                       
Query: 245 gtgtacaagagaacaagtctgagtcctggctttctgccacgtacaaaacgaacccaaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtacaagagaacaagtctgagtcctggctttctgccacgtacaaaacgaacccaaaat 504

                                                                       
Query: 305 agccttaccataatcataagcgctaaaaggctgaaattgctaaacggaaaggtaggatgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agccttaccataatcataagcgctaaaaggctgaaattgctaaacggaaaggtaggatgg 564

                                                                       
Query: 365 tgtacttgctgtcttgtgttaggcaatggtttctttgaaatgacataaacacctgaggga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtacttgctgtcttgtgttaggcaatggtttctttgaaatgacataaacacctgaggga 624

                                                                       
Query: 425 aaaaaaagctaaattactcttcattaaaaaaaaagagataaattccattttaccactgcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaaaaagctaaattactcttcattaaaaaaaaagagataaattccattttaccactgcc 684

                                                                       
Query: 485 ctttcatattgatcaagctgatttccatgccaaatttgatgctgatttttacacagcaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctttcatattgatcaagctgatttccatgccaaatttgatgctgatttttacacagcaaa 744

                                                                       
Query: 545 ctctggctcatgtaataaaatgccaggaacaaacataaaatgatataagaggcacattga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctctggctcatgtaataaaatgccaggaacaaacataaaatgatataagaggcacattga 804

                                                
Query: 605 ttgcaaagggggtatgtttgcaaaaaatatctttgat 641
           |||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttgcaaagggggtatgtttgcaaaaaatatctttgat 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no055_c18.g1 MSMg01no055_c18.g1 CHROMAT_FILE:
MSMg01no055_c18.g1 PHD_FILE: MSMg01no055_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:31 2005
         (540 letters)



>mm_chr6_147340572_147341511
          Length = 940

 Score = 1044 bits (540), Expect = 0.0
 Identities = 540/540 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactacggggagattcgataccttcttctggccacaacaggcaccagcacttagggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caactacggggagattcgataccttcttctggccacaacaggcaccagcacttagggaca 552

                                                                       
Query: 61  cataccatcctccaaagcacacatacacaaacaaaaacaaaacaagaacagaggaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cataccatcctccaaagcacacatacacaaacaaaaacaaaacaagaacagaggaaaaat 492

                                                                       
Query: 121 attgtataggtgaaagaaagttgctcagaaaacgttttcccccctttatttaaagaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 attgtataggtgaaagaaagttgctcagaaaacgttttcccccctttatttaaagaaata 432

                                                                       
Query: 181 gtcctttattctacccttaaactcctttttgaaagtctactgtagagtccagcactgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtcctttattctacccttaaactcctttttgaaagtctactgtagagtccagcactgtga 372

                                                                       
Query: 241 aagctgtggccatgtggctgctgaaagttggcttcgtttacttttggctgtggttgacgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aagctgtggccatgtggctgctgaaagttggcttcgtttacttttggctgtggttgacgt 312

                                                                       
Query: 301 atggaaaggattttgttttgttttgttttgttttgtttggttgttttgttttgttttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atggaaaggattttgttttgttttgttttgttttgtttggttgttttgttttgttttgtt 252

                                                                       
Query: 361 tttttcctactctgaaacactggagtcttggtgagcctttgttatcactccgcatcacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttttcctactctgaaacactggagtcttggtgagcctttgttatcactccgcatcacaa 192

                                                                       
Query: 421 caggagagaagaatcttagacacaaaaagtttcttggaagaagaataaacaggttacacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 caggagagaagaatcttagacacaaaaagtttcttggaagaagaataaacaggttacacc 132

                                                                       
Query: 481 agttcaaacaagccacggaattcagaactataatatctgtgatgttattagtaaagcagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 agttcaaacaagccacggaattcagaactataatatctgtgatgttattagtaaagcagg 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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