BAC Information

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BAC

Clone NameMSMg01-055E20
Chromosome6 (Build37)
Map Location 43,853,234 - 43,853,665
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055E20.T7 (MSMg01no055_e20.b1)MSMg01-055E20.TJ (MSMg01no055_e20.g1)
ACCAG283008AG283009
length704789
length of high quality
(start - end)		574 (46 - 619)---
definitionCHROMAT_FILE: MSMg01no055_e20.b1 PHD_FILE: MSMg01no055_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:41 2005CHROMAT_FILE: MSMg01no055_e20.g1 PHD_FILE: MSMg01no055_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAAGTACCTTTGACTTACAAGATTAAGAGAATTTTGAAGTATA
CCTTCTTGTCCAAATATTTAATTTGCTAGCTACTAAGATGTAAATTTTCC
TATACCAAGGGACTATGCCTATAAACAACATCTAGATCAGTTTAAAAAAA
CAACACACGCACAAAATCATTGCTAGAATGTTTTTTCTGTAATCAACAAT
CAAAATAAACAGTCTTAAGGTCTTGGATTCACATAAAGGTCACTATGCTA
AATGAAATAAAAAGACACTCCCAAAAGTCCATATACAGTCTAATCCTGTT
TATGTGGAATTCCTAATATAAAGCTGTGAAGTTGAAGTCAGGAATCAGTG
TCACAGCTTAAAGATTCAGAGAGAAATGTGGCAGTGTCCACAGAGGGACA
GTAAGAAGAAAATCATTCTTATCACACAGTAATTCTGTGTCTCAGTCACA
GTGGTAGTTACACAAACCCACATGTCACTGACCAGTGTTCACACACATGT
ATTTCATGGATGCCAATGTTTGGTCTTGCCGTTAGACTCTATGTAGATGA
GGTCACTGTGGGGAAATAGGTGAGTGGTGCCTAGGATTGCTCTGTCCTTA
CTCTGTAGATGCCTGTGAAATTAACAGCAGTGTAAACTCAGTGAGTCACT
AGCN

GCCTCGCGGTGCGGGATGACNNNCCANCCCCCTCCCCCCTCCTTCCCNNC
CCCCATGATATGGGTAGGCCTGGTTGGNGNNNGGTTTCCGCACCAGAGGN
GANNCNANAGAAGTTTTACAAAAAGAAGACAGGNNNNAGAGCGAGCNCAC
AGAGGGGGNGGGCNGGCAGGGNCAGCCCCCCNAACCAGGTGCAGACCCAG
AANCAGAAGGCAGNCAGCCCGAAAGGCACCNAGGCAAGAGGGGCNCAACC
AGACAGCGCNNACNCCACCCCGGGACAGGCCCCCTCCACGGAGCACAGGG
GACCGGAGTCACAAGCCCNGGNCNCNGGCNGGCATNNCANACACCAAGNA
GCCCNGGCAACAGNNGACNNATTTTTTTTTTCTGACGACACCGGCAGCCN
ATCACAGCAGAACTGTCTGTACCTCCCGTTCAAGAGGGTCTTACACCCTC
TTAATACCTCTTCAGGCACTATACACACAAGGAGTACATGCATACATGCA
AGCAAAACTCCATACAAGAAACAGCTATACTAAGACATACAGTTTCATTT
AGTGCCAAGCAGTGGCCCTTGGAAGCAGCAATGAACATATGACCTAGTGG
ATCCATTTTTAAATTGGAGAACCCATTACCTGGTTTCCTTCAAGAACAGA
AGTTCTATCGCATGCTACCTTTTAAAGATAGTAATTATTTCACTTGCCTT
AAAATGCATGAATATTTATTATTCCTTCCATCCAAAATTTGTTTCTAGAA
AACATTCCCTTTTTAAGGACATTCTGTTTGATCCCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_e20.b1 MSMg01no055_e20.b1 CHROMAT_FILE:
MSMg01no055_e20.b1 PHD_FILE: MSMg01no055_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:41 2005
         (574 letters)



>mm_chr6_43852692_43853665
          Length = 974

 Score =  820 bits (424), Expect = 0.0
 Identities = 430/432 (99%)
 Strand = Plus / Minus

                                                                       
Query: 143 cagtttaaaaaaacaacacacgcacaaaatcattgctagaatgttttttctgtaatcaac 202
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 974 cagtttaaaaaaacaacacatgcacaaaatcattgctagaatgttttttctgtaatcaac 915

                                                                       
Query: 203 aatcaaaataaacagtcttaaggtcttggattcacataaaggtcactatgctaaatgaaa 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 aatcaaaataaacagtcttaaggtcttggattcacataaaggtcactatgctaaatgaaa 855

                                                                       
Query: 263 taaaaagacactcccaaaagtccatatacagtctaatcctgtttatgtggaattcctaat 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 taaaaagacactcccaaaagtccatatacagtctaatcctgtttatgtggaattcctaat 795

                                                                       
Query: 323 ataaagctgtgaagttgaagtcaggaatcagtgtcacagcttaaagattcagagagaaat 382
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atgaagctgtgaagttgaagtcaggaatcagtgtcacagcttaaagattcagagagaaat 735

                                                                       
Query: 383 gtggcagtgtccacagagggacagtaagaagaaaatcattcttatcacacagtaattctg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gtggcagtgtccacagagggacagtaagaagaaaatcattcttatcacacagtaattctg 675

                                                                       
Query: 443 tgtctcagtcacagtggtagttacacaaacccacatgtcactgaccagtgttcacacaca 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgtctcagtcacagtggtagttacacaaacccacatgtcactgaccagtgttcacacaca 615

                                                                       
Query: 503 tgtatttcatggatgccaatgtttggtcttgccgttagactctatgtagatgaggtcact 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgtatttcatggatgccaatgtttggtcttgccgttagactctatgtagatgaggtcact 555

                       
Query: 563 gtggggaaatag 574
           ||||||||||||
Sbjct: 554 gtggggaaatag 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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