BAC Information

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BAC

Clone NameMSMg01-055P19
Chromosome6 (Build37)
Map Location 145,947,918 - 145,948,501
singlet/doubletsinglet
Overlap genenone
Upstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
Downstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055P19.T7 (MSMg01no055_p19.b1)MSMg01-055P19.TJ (MSMg01no055_p19.g1)
ACCAG283507AG283508
length702769
length of high quality
(start - end)
604 (43 - 646)424 (77 - 500)
definitionCHROMAT_FILE: MSMg01no055_p19.b1 PHD_FILE: MSMg01no055_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:32 2005CHROMAT_FILE: MSMg01no055_p19.g1 PHD_FILE: MSMg01no055_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATCCTTCCCGTTTGTCTCCTAAGGGAGTCCACAGTCTGTCCGGTTGA
TGTTAGTAACCATCATGGCGGGGAGGGAGAACCAGCTCTGAGAATTGCTC
CTTGTGTTCACTGAGGCACACGCACCCTACAAAACACACAGGTAAGTACA
TATCATTTTGAAAATTTATAAATTTATATCAGCAAATGCTTTCTTGTGAC
AGCCCTCTCCCCACACCATCATGCTTTTCCATGTGTCGTCATGAAGCCAG
CATCTTCCCAGTCTCTCTTCTGTAAGCCCCTGAAAATCTGGAAGGGCATG
TGGGGCCTCTTATGAAGCTGGTCAGATGTGTTTGATGTTGTGGCAGGTCA
GTGTGTTCAGGGTGACTTGCCTGATGAACCTTGTGGTAGTTAATATTATC
AAAGGGAAGAGCTGTAAAATCACATAGGAGACAAACTTCTGGCCATGCTA
TGAGGAAATTTCCAGACAGGGTTCATTGACAGGAAAGATCTACCCCAACC
GAACAGAACCATCCCGTGGGCTGGGGCCCAGACTGAATAACAAGGAGAAA
GCAAGCCGAGCACTAGCTTCCATCTCTCTGTGATTCCTGACTGCAGACGC
CCCAAGAGCCGCTGCCTCCAGCTCCTACAGCCATGGATGCTATCTTCAAA
CN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGAAGTAGGAGAGACAGGAAG
TAAATTTTTAAAAAGCAGCGACAGCCCTACACCCCACAGTGCTGCAGAGC
ATAGTACTCCCTCACCCCCACTGTAAATCTAGGACCTACAAGGGAGGCTG
TTTTCAGGTCAGACCAGGGAGCTTGAGGAGACTCTGATAGGTAGGCCTAG
AACTGGGGGCGGAGCCACAGGTCAATCTGGGACTCTGATAGGTGAGCCTG
GAACTGGGGGCGGAGCCACAGGTCAGTCTGGGACTCTGATAGGTGAGCCT
GGAACTGGGGGAGGACTCACAGTCCTATGTAGGCTAACCCTGACCCAGAA
GCCAAAGCAGGCAGGACTTGTGAGCTTGGAGTTTTTATTCTACCCAGAAT
GTTTTTAAAAAAAGCCCTTGGGAGGGGGAGGGGGAGAGGCAAGGGGAGGT
AGAGGTTGTTCCTGCTCTATTCCCTCCGGTTTCGTCCTCCCCAGCTATTC
TTTTTTGCGCCACTTCCTACGTTTTATTCCCCCTTTTATTTCCTTTCTTC
ACCCTTTCGTAATATTCCCTCCTCCTTCTCTACCTTCTATTTCCTTCCCT
ATATTTTCCCCGTATTACTTTTCCCATGTTATTTTTCTTTTACTTTTACA
ACCACCTTTTTTCGTTCTTACCTTTCCTCGCCCTCTTTTGTCTCCTCCCC
ACTTTTTTTCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_p19.b1 MSMg01no055_p19.b1 CHROMAT_FILE:
MSMg01no055_p19.b1 PHD_FILE: MSMg01no055_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:32 2005
         (604 letters)



>mm_chr6_145947698_145948701
          Length = 1004

 Score = 1033 bits (534), Expect = 0.0
 Identities = 572/586 (97%), Gaps = 4/586 (0%)
 Strand = Plus / Plus

                                                                       
Query: 21  gtttgtctcctaagggagtccacagtctgtccggttgatgttagtaaccatcatggcggg 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gtttgtctcctaagggagtccacagtctgtccggttgatgttagtaaccatcatggcggg 280

                                                                       
Query: 81  gagggagaaccagctctgagaattgctccttgtgttcactgaggcacacgcaccctacaa 140
           ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gagggagaactggctctgaaaattgctccttgtgttcactgaggcacacgcaccctacaa 340

                                                                       
Query: 141 aacacacaggtaagtacatatcattttgaaaatttataaatttatatcagcaaatgcttt 200
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aacacacaggaaagtacatatcattttgaaaatttataaatttatatcagcaaatgcttt 400

                                                                       
Query: 201 cttgtgacagccctctccccacaccatcatgcttttccatgtgtcgtcatgaagccagca 260
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 401 cttgtgacagccctctccccacaccatcacgcttttccatgtgtcgtcatgaagccagca 460

                                                                       
Query: 261 tcttcccagtctctcttctgtaagcccctgaaaatctggaagggcatgtggggcctctta 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcttcccagtctctcttctgtaagcccctgaaaatctggaagggcatgtggggcctctta 520

                                                                       
Query: 321 tgaagctggtcagatgtgtttgatgttgtggcaggtcagtgtgttcagggtgacttgcct 380
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 521 tgaagctggtcagatgtgtttgatgttgcggcaggtcggtgtgttcagggtgacttgcct 580

                                                                       
Query: 381 gatgaaccttgtggtagttaatattatcaaaggg--aagagctgtaaaatcacataggag 438
           ||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||||
Sbjct: 581 gatgaaccttgtggtagttaatattatcaaagggggaag--ctgtaaaatcacataggag 638

                                                                       
Query: 439 acaaacttctggccatgctatgaggaaatttccagacagggttcattgacaggaaagatc 498
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 639 acaaacttctgggcatgctatgaggaaatttccagacaggattcattgacaggaaagatc 698

                                                                       
Query: 499 taccccaaccgaacagaaccatcccgtgggctggggcccagactgaataacaaggagaaa 558
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 699 taccccaaccgaacagaaccatcccatgggctggggcccagactgaataacaaggagaaa 758

                                                         
Query: 559 gcaagccgagcactagcttccatctctctgtgattcctgactgcag 604
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gcaagccgagcactagcttccatctctctgtgattcctgactgcag 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)