BAC Information

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BAC

Clone NameMSMg01-056C20
Chromosome6 (Build37)
Map Location 21,571,458 - 21,571,764
singlet/doubletsinglet
Overlap geneKcnd2
Upstream geneLOC100041343
Downstream geneTspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056C20.T7 (MSMg01no056_c20.b1)MSMg01-056C20.TJ (MSMg01no056_c20.g1)
ACCAG283648AG283649
length695709
length of high quality
(start - end)
311 (35 - 345)460 (79 - 538)
definitionCHROMAT_FILE: MSMg01no056_c20.b1 PHD_FILE: MSMg01no056_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:46 2005CHROMAT_FILE: MSMg01no056_c20.g1 PHD_FILE: MSMg01no056_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATGTT
TCCTAATGAGTGTACTTAGATATAAGTTGGCTAGAACAGCAAGAACTTGA
AATCTGAGCCAAGCATTTTGAAGTTATTTAATATCAGTAAAATGAATTTT
GCCCAAAAGATGGAAGCTATGGTCATGAAAATGTCAAAAGTTCTAAGAAC
TATAATATCACTATGGCCTTACAGGCATTTATATGACATATTCATTTTAG
ACAGTACACTATTGATCTAATCAATAGTATATAAAACTTGGAGCTATAAA
TCTAGGCTCATATTAAAACCTTAGGCAAGAAACATATTTCAACTCTTTTT
TTCTCACCCCCCCCGCACCAGATTCAGCAAACAAATATTTATTGAATAAA
ATATTTATGATAAAGAAATCCTACATCCAAACGTTGTGTATACGCTTAAG
TGATAAAACATCTTGAGCCTCTGGAGAAGCCAATGGAAGGATTCTACACT
GGTATGCTACAATCTCTGAGGCCCTGCTGGTAAGCTTGTCAGCCTGACTT
GAATATGACAAACACAATGTAATCATGACTGGCATTAAGCCCCTTCATTT
ACATGTTTGCAAGCCCAGAATCTTGACTGCTCTGCATGTGATCTTCCCAA
CTTCTCTGCCTCTTTCAGCCTATCCCCAGCCTGTTATAGGTATCT
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATC
ATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGG
GTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGT
GGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGG
CAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCT
CTGTTGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTT
CTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCT
CAGGGAAGGTGTACAGTTATCTGGTGTTTGTACCTCCTCCTGGCTGAAGG
TGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGG
AAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTG
TGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGATGATGGTGCCG
CCCCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTC
TGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAG
TCAGGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_c20.b1 MSMg01no056_c20.b1 CHROMAT_FILE:
MSMg01no056_c20.b1 PHD_FILE: MSMg01no056_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:46 2005
         (311 letters)



>mm_chr6_21571254_21571964
          Length = 711

 Score =  547 bits (283), Expect = e-160
 Identities = 301/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgtttcctaatgagtgtacttagatataagttggctagaacagcaagaactt 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgtttcttagtgagtgtacttagatataagttggctagaacagcaagaactt 264

                                                                       
Query: 65  gaaatctgagccaagcattttgaagttatttaatatcagtaaaatgaattttgcccaaaa 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaatctgaggcaagcattttgaagttatttaatatcagtaaaatgaattttgcccaaaa 324

                                                                       
Query: 125 gatggaagctatggtcatgaaaatgtcaaaagttctaagaactataatatcactatggcc 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 gatggaagctatggtcatgaaaatttcaaaagttctaagaactataatatcactatggcc 384

                                                                       
Query: 185 ttacaggcatttatatgacatattcattttagacagtacactattgatctaatcaatagt 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacaggcatttataggacatattcattttagacagtacactattgatctaatcaatagt 444

                                                                       
Query: 245 atataaaacttggagctataaatctaggctcatattaaaaccttaggcaagaaacatatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 atataaaacttggagctataaatctaggctcatattaaaaccttaggcaagaaacatgtt 504

                  
Query: 305 tcaactc 311
           |||||||
Sbjct: 505 tcaactc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)