BAC Information

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BAC

Clone NameMSMg01-057M17
Chromosome6 (Build37)
Map Location 134,092,766 - 134,093,106
singlet/doubletsinglet
Overlap geneEtv6
Upstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneLOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057M17.T7 (MSMg01no057_m17.b1)MSMg01-057M17.TJ (MSMg01no057_m17.g1)
ACCAG284864AG284865
length764709
length of high quality
(start - end)
224 (64 - 287)341 (69 - 409)
definitionCHROMAT_FILE: MSMg01no057_m17.b1 PHD_FILE: MSMg01no057_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:52 2005CHROMAT_FILE: MSMg01no057_m17.g1 PHD_FILE: MSMg01no057_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTAATGCGAGAGAAGGCGCGGAATTC
CTCAGTATGGCGGGAGAATTTCACATGTACCTCATGACAGAAACCTGCCA
GGAGAGCCCCTGTCCTCTCAACATTTCACCAAACCACCACAAAAACAACA
CTCATCAATCAATGTGTGTATGTGTGTGTGTGTGTGTGTGTGCGCATGAG
AGCGGGGGGAGGGGGAGGGAAACACTTCACCAACCACCACAGAAACACTC
ATCAGTGCGTGTGTGCATGGGGGGGGGTGTGGAAGGGAGAGGGAACCTCC
TTTTCTTCCCCACTTTTTTTTTTTTTATCTTATACACTTCTTCTCCTTTC
TCTCATTTTTTTCCCCCCTCCCCGACTGCCCTATCAATTTTTTTGTTTTT
TTTTTTTTTTTCCCCCCCCCATCTATTATTATTTTGCTACTCTACTTTAA
TTTTTTCCCTTTTATTTTCCCATCTTTTTTTTCTTTTCCTTTTCACTCTT
TATTCTTCCCTCCCATTTTTTTCCTTTTCTTCCCTTATTTTTCTCTTCGT
CATTTTCCTTCTACTTTATCACTATTTCTCTCTTTTTTTTCCCCTTTATA
TTTATCTTCGCTTCTCCTCTCCTCTACGATACTCCTTTATGTTTCCACTC
TCCCCTGCTTCTTTATTTTTTATACATTTACTCTTTTCAATTTTAACTTT
TTTTTTCTATCGCTTCTATTCGATTTTATCCCTATCATTTCTTTCTCTTT
CCTTCTTATTTTTC
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTACGTTACTACTCCTGCGTGTGTGTGTTTAA
TAATTTAGTTCCTGTGAGAGCTTCGCTGCTCACCCCACTCTGCTGCTGTG
TCTCCTCAGCAGAGTGACTGGGGTTCATCCAGTTGCAAGGCAAGCTGAAC
TCCATCAGAATCTGCACACACAGACAGATGTGGCGGGCGCCTCTGTTTTC
ATTGGCCGGAACCATAATTCTCTATACTTTGAAGTCATGCTTGTCCTCAA
AAGCAGAGACAACCATGATAGCTAAATATAATCTAGTTAATATTTTATCG
TGTCGTGAGAAACAAGACACATCCGTACACGTTATCTAATCACGTGACAG
TTCTTGAAGCACCCGTTCAAGATCCCGCCTCAGGTCAATGGGCTTGTCCA
GGCTCACACAGGAGGGAAAGGGTCTAACAGGATTTCTGCCCCACAAGCTA
GCTTTTAGCCTCTTTAGGAGGAGTCATATAGGCAATGTCTCTGGGACTGG
AAGATTAGTCCACCAAAGAATGTGGATAGACTATGGGAAATAAAGGGTTC
AATGGCAGGCGTGGTTCTAAAGACGCCCCTTGGACATGCATAGGCACGAG
CCTCCATCACGCTAGCATGTCCCTTTCACAAGGCTGAAGGGGGAGTCTTG
GGTAGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_m17.g1 MSMg01no057_m17.g1 CHROMAT_FILE:
MSMg01no057_m17.g1 PHD_FILE: MSMg01no057_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:52 2005
         (341 letters)



>mm_chr6_134092566_134093306
          Length = 741

 Score =  636 bits (329), Expect = 0.0
 Identities = 338/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacgttactactcctgcgtgtgtgtgtttaataatttagttcctgtgagagcttcgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ttacgttactactcctgcgtgtgtgtgtttaataatttagttcctgtgagagcctcgctg 260

                                                                       
Query: 61  ctcaccccactctgctgctgtgtctcctcagcagagtgactggggttcatccagttgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaccccactctgctgctgtgtctcctcagcagagtgactggggttcatccagttgcaa 320

                                                                       
Query: 121 ggcaagctgaactccatcagaatctgcacacacagacagatgtggcgggcgcctctgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaagctgaactccatcagaatctgcacacacagacagatgtggcgggcgcctctgttt 380

                                                                       
Query: 181 tcattggccggaaccataattctctatactttgaagtcatgcttgtcctcaaaagcagag 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattggccggaaccataattctctatactttgaagtcatgcttgtcctcaaaagcagag 440

                                                                       
Query: 241 acaaccatgatagctaaatataatctagttaatattttatcgtgtcgtgagaaacaagac 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaccatgagagctaaatataatctagttaatattttatcgtgtcgtgagaaacaagac 500

                                                    
Query: 301 acatccgtacacgttatctaatcacgtgacagttcttgaag 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatccgtacacgttatctaatcacgtgacagttcttgaag 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)