BAC Information

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BAC

Clone NameMSMg01-058G05
Chromosome6 (Build37)
Map Location 115,248,921 - 115,249,085
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4
Downstream genePparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058G05.T7 (MSMg01no058_g05.b1)MSMg01-058G05.TJ (MSMg01no058_g05.g1)
ACCAG285315AG285316
length672740
length of high quality
(start - end)
166 (83 - 248)101 (145 - 245)
definitionCHROMAT_FILE: MSMg01no058_g05.b1 PHD_FILE: MSMg01no058_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:37 2005CHROMAT_FILE: MSMg01no058_g05.g1 PHD_FILE: MSMg01no058_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCAAAATTTGCGGCCGCTAAAGGAATCACAATTCGGACCTCGGGCGCG
GAANNCCNGATTTCCCTAAAACCAGGAGAANTGGATATAANATCCATTTT
CTTTATTAGTCTCTCTTTCCCCTTTTGGGGGAAGGAAGTGTGTTATGGCA
CAATGTACGATATCATAGGACAAGTTGAGAGGTCCGTGCTGTCCCTCCAC
TGTGTTAGTCTCAAGATTGAGTCCACCATCAGCTTTGTCAGCAAACATCT
TTCCCTAATGAGCCATCTCCCTGGGCAGCAATCCATCTTAAACAGAGATG
CTAATCGAATTAGTTTCCATATTTTTTGGGCTGTTCACATGATATTAGGG
CTCAATCTACCATCTTCCCTTCTTCTTTGTCCAACATGTCCTTTCCCCTC
TTTGTATGTTTGCTTTTGAGCCATTCACAAAATATTTGTCACCTCATTAT
GTTCTTTCTCTCAGCATGTATGTTTGATTTTTTAAAATTTTCAATGCTAG
TGTATTACTTACAGGATGCATTCTTAACAGGCTTTATTGATACATACTAG
TTATGTGTTAGTTACCTGCTCCTAGTATCTGATTCATCACCTTCTCATAT
ATTCCCACCCCTTGTACTCTGTCAGTTTACCCACTCTTTGTCATCCTGCC
ATGCCTTTCTTGTTTTACCCCC
CCCCCCCTCCCCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTTTACATGAT
GGACTGTCATCCTAAGACAAAACTGGCAATGTAGTCATCCTATAAAATGT
TCCAAAGATGGAAACAAGAAAGGAAAGAAAGGATAAGATATACGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTG
CTTCTTTCCTTTTTCTCTTATACCTCTCTCCTCTTTCTCTCTCCCATCTA
TTCTCCTTTTTCTTATCTTCCTTTTCACTTTCTTTTCTTCTTCCATTTAT
CCTCATTCTATCTTCTATTTTCTTTCTTCTCTCTCTCTCTCTTTTTTTCT
CTCTTCTTCTTTCTCTTCTTCCTCTTTCCCCCTTTCCCTTTTCCTTTTTC
CTTTTCCCTCCTTCCCTTTCCCCTTTCCTCTCTCCCTCTCTTTCTTCTTC
TTTCCTCCTCTTCTATTCCACTTTCTTCTCTTTTCACACTTTACTCATTC
TCCTCTTTCTCCCTTTTTTCCCTCTTCTCCTCTTATACTTCCCCTCCATT
ACTTCTTTTTTCCCCTTTACTTCCTTCTCTCCTCCCTCTCCTTTCCTCTC
TTATCCCTCTTTCCCTTTCATCCTTTCCTCTCTTCTTCTCCTTCTCCTCC
TCCTTCCCCTTACTCTTCTATCCTTATTATTTTCCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_g05.b1 MSMg01no058_g05.b1 CHROMAT_FILE:
MSMg01no058_g05.b1 PHD_FILE: MSMg01no058_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:37 2005
         (166 letters)



>mm_chr6_115248721_115249286
          Length = 566

 Score =  282 bits (146), Expect = 6e-81
 Identities = 160/165 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatataanatccattttctttattagtctctctttccccttttgggggaaggaagtgtg 60
           |||||||| |||||||||||||||||||||||||||  ||||||||||||||| ||||||
Sbjct: 201 ggatataatatccattttctttattagtctctcttttaccttttgggggaagggagtgtg 260

                                                                       
Query: 61  ttatggcacaatgtacgatatcataggacaagttgagaggtccgtgctgtccctccactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatggcacaatgtacgatatcataggacaagttgagaggtccgtgctgtccctccactg 320

                                                        
Query: 121 tgttagtctcaagattgagtccaccatcagctttgtcagcaaaca 165
           |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttagtcccaagattgagtccaccatcagctttgtcagcaaaca 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)