BAC Information

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BAC

Clone NameMSMg01-058P10
Chromosome6 (Build37)
Map Location 111,311,990 - 111,457,071
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058P10.T7 (MSMg01no058_p10.b1)MSMg01-058P10.TJ (MSMg01no058_p10.g1)
ACCAG285754AG285755
length708703
length of high quality
(start - end)
246 (70 - 315)218 (67 - 284)
definitionCHROMAT_FILE: MSMg01no058_p10.b1 PHD_FILE: MSMg01no058_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:21 2005CHROMAT_FILE: MSMg01no058_p10.g1 PHD_FILE: MSMg01no058_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,456,826 - 111,457,071)(111,311,990 - 111,312,207)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCAC
CAGTTTTCATACAAAAGTACAGAGATAAAGGAAACTCCAGCCCTCACAAA
GTCACTCAGGCTGCATCATGGATGCCATTCTCTAAGACCACATATCCATA
ACTGTGATAGAGCAGCATTGCAGAACTATTTCTAGTCTCTAAACATGCCC
CACTATTTTTATCCTTCAAATTATTTGTGCAGAATCCTCCCTGTTTCAAG
AGTGTGTGCCACATTGCATACAGGATGGAACATGGCGCTCTCCACCATTA
GGTGGGCAACCAATATTCCTGCAATAAAAGCCCACATCATCTGGAATTGA
AATTGCTTACCCTAGCCTTCCCCATCATGTGCGAACTCCCTGAAGGCCTT
GTCCATTTCTGTCTCTCATTCATGCCACCTCACGGCTGGCTCTGGCTAAA
GCTTCTGAGGCATTCATTTGATTGTCCCCCCTTAACAGAAGTCCCCTGGG
TTCACATATCTTGACGAGACAGATCACGCCAGCGCCTGAATGTACCCTGT
GATGTAGTTTCCATGACCCAAAGGCACGCCGTGTATAACTCTTCCAGTCA
CAGTACTGGCTATGTGTGCCTTCCCCCCCTCGCTTCCCTGGAATGCCGAC
TTGCCATGTTATGGCGCCTGGTTTCTACTGGTTTCTGATACTGCCTTGCC
ACATCGTC
TGTGCGAGGCCTGGCGGACGCCTGTTTCAAACAAGGAGGTGAACTATAGA
AGTTTCCTCGAAATTCCATTGTCTTGGGGAAGAAAAGCAAGCAGTAAATT
CCATAATAACTATTTACTGTGTTGTAGAATTGAAATCCATTTTGATTCTG
CTAGGGATAGCTCTGTGAAATATCTCACTGGTTGATTTTATTAGTTTAAC
ACAGAGGCCAAACAAAGTTCTTATTTGGAATGTAAAATGTCATCCCCAAT
GAAATGTACTTTTTAAATTCAAGGATAATATAAGATATCACCGTCACCTT
GATTGATGATTGCTATTCTAAGACTTGCTAGAATGGAAGGCCTACAGTGA
ATATAGCAGTGTCAATCTATGGCTATAGCCTCAGATTCTGTGGTTTGGGA
ATTATGTATAGGTATGACTGTAGAGAGTCCACAAAATAGTACAAGTAGTG
AAATAATACTATGTCAGAGGCTAGATAGTTTTTTGTACTGTGCTGTTATG
ATGTTATATTGTGGCACTGTCTACTCAAGGCACTAATTGTCCCCTAATAA
CCGCCATGATTTGTCATCTGTGTCTACCCTCCCTTAAAAGAGTTGTCCAC
ACAAGGCCCACGTCGGAAATTCTTCACGACCCCTTCAGCCACATCTCCCT
TTTTCTAGCTTCGCAACTACATGCCATCTGAAAAATCTATTTTCGTTTTG
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_p10.b1 MSMg01no058_p10.b1 CHROMAT_FILE:
MSMg01no058_p10.b1 PHD_FILE: MSMg01no058_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:21 2005
         (246 letters)



>mm_chr6_111456626_111457271
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagataaaggaaactccagccctcacaaagtcactcaggctgcatcatggatgccatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 446 cagagataaaggaaactccagccctcacaaagtcactcaggctgcatcgtggatgccgtt 387

                                                                       
Query: 61  ctctaagaccacatatccataactgtgatagagcagcattgcagaactatttctagtctc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 386 ctctaagaccacatatccataactgtgatagagcagcactgcagaactatttctagtctc 327

                                                                       
Query: 121 taaacatgccccactatttttatccttcaaattatttgtgcagaatcctccctgtttcaa 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 326 taaacatgccccactatttttatcctccaaattatttgtgcagaatcctccctgtttcaa 267

                                                                       
Query: 181 gagtgtgtgccacattgcatacaggatggaacatggcgctctccaccattaggtgggcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagtgtgtgccacattgcatacaggatggaacatggcgctctccaccattaggtgggcaa 207

                 
Query: 241 ccaata 246
           ||||||
Sbjct: 206 ccaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no058_p10.g1 MSMg01no058_p10.g1 CHROMAT_FILE:
MSMg01no058_p10.g1 PHD_FILE: MSMg01no058_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:21 2005
         (218 letters)



>mm_chr6_111311790_111312407
          Length = 618

 Score =  422 bits (218), Expect = e-122
 Identities = 218/218 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgtcttggggaagaaaagcaagcagtaaattccataataactatttactgtgttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgtcttggggaagaaaagcaagcagtaaattccataataactatttactgtgttgta 260

                                                                       
Query: 61  gaattgaaatccattttgattctgctagggatagctctgtgaaatatctcactggttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaattgaaatccattttgattctgctagggatagctctgtgaaatatctcactggttgat 320

                                                                       
Query: 121 tttattagtttaacacagaggccaaacaaagttcttatttggaatgtaaaatgtcatccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattagtttaacacagaggccaaacaaagttcttatttggaatgtaaaatgtcatccc 380

                                                 
Query: 181 caatgaaatgtactttttaaattcaaggataatataag 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgaaatgtactttttaaattcaaggataatataag 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)