Query= MSMg01no059_p24.b1 MSMg01no059_p24.b1 CHROMAT_FILE:
MSMg01no059_p24.b1 PHD_FILE: MSMg01no059_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:38 2005
(564 letters)
>mm_chr6_94107672_94108635
Length = 964
Score = 772 bits (399), Expect = 0.0
Identities = 405/407 (99%), Gaps = 1/407 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtttgtattttctctcttctattagtctggattaaaaatgacaaccaaaacc 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 407 ggaattctgtttgtattttctctcttctattagtctggattaaaaatgacaaccaaaatc 348
Query: 64 ccaacattcaaaatggttgataatgtattttatagaagggctgtcatcagttacctttcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccaacattcaaaatggttgataatgtattttatagaagggctgtcatcagttacctttcc 288
Query: 124 aatttgataattgatatttgattatctttttcaatacttgggtggaatggtttattttag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aatttgataattgatatttgattatctttttcaatacttgggtggaatggtttattttag 228
Query: 184 tcattttaatgatttttt-aaaaaagatttatgtgtatggatgttttgtctgcatgtatg 242
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tcattttaatgattttttaaaaaaagatttatgtgtatggatgttttgtctgcatgtatg 168
Query: 243 tcacaccatatatgtgtagtacctacagaggtcagaagagacggtgttggactccttgga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tcacaccatatatgtgtagtacctacagaggtcagaagagacggtgttggactccttgga 108
Query: 303 actgtagtgacagatagttgttagctaccaggtgggtggtgggaattgaacctaagtcct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 actgtagtgacagatagttgttagctaccaggtgggtggtgggaattgaacctaagtcct 48
Query: 363 ctagaagagccactagtgctctcaactgctgaaccctctccccagtt 409
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 ctagaagagccactagtgctctcaactgctgaaccctctccccagtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_p24.g1 MSMg01no059_p24.g1 CHROMAT_FILE:
MSMg01no059_p24.g1 PHD_FILE: MSMg01no059_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:38 2005
(561 letters)
>mm_chr6_93976582_93977542
Length = 961
Score = 882 bits (456), Expect = 0.0
Identities = 475/484 (98%), Gaps = 6/484 (1%)
Strand = Plus / Plus
Query: 1 attctgtgaatctctttatcaagatatttgtcaaggtcatgatgacatgaaaataagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgtgaatctctttatcaagatatttgtcaaggtcatgatgacatgaaaataagaga 260
Query: 61 ctcgactgtctatggttaatgtgacaccacaatggtcaccacgaacttgttttgttttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcgactgtctatggttaatgtgacaccacaatggtcaccacgaacttgttttgttttgt 320
Query: 121 tttgttttgtttttttagagaataggtattgagactaaccaggcactctcactgtagaag 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtttt-----tttagagaataggtattgagactaaccaggcactctcactgtagaag 375
Query: 181 aaagttctgaaatattgccacgaagactctgctggatctgtgttccctacagtgatgaaa 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 376 aaagttctgaaatattgccacgaagactctgctggatctgcgttccctacagtgatgaaa 435
Query: 241 aggaacgtaataatgagcgcaggtagcaaatccctgacgacatgtttccaggacacgacg 300
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 436 aggaacataataatgagcgcaggtagcaaatccctgacgacatatttccaggacacgacg 495
Query: 301 gagatgaaactctgaaattagtcatatgcataggcaggatggacgaagttgtcctggtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gagatgaaactctgaaattagtcatatgcataggcaggatggacgaagttgtcctggtgc 555
Query: 361 cctgctctgcccttcccactgcacttccatcacgcttccactctctgacacgcatgcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cctgctctgcccttcccactgcacttccatcacgcttccactctctgacacgcatgcaca 615
Query: 421 ggcagtctactttcattatctattagtaacacccggccactaaatttcttctcatttctg 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggcagtcta-tttcattatctattagtaacacccggccactaaatttcttctcatttctg 674
Query: 481 taac 484
||||
Sbjct: 675 taac 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
