BAC Information

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BAC

Clone NameMSMg01-060B04
Chromosome6 (Build37)
Map Location 76,638,601 - 76,639,150
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
Downstream geneLOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060B04.T7 (MSMg01no060_b04.b1)MSMg01-060B04.TJ (MSMg01no060_b04.g1)
ACCAG286603AG286604
length723690
length of high quality
(start - end)
667 (47 - 713)466 (75 - 540)
definitionCHROMAT_FILE: MSMg01no060_b04.b1 PHD_FILE: MSMg01no060_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:43 2005CHROMAT_FILE: MSMg01no060_b04.g1 PHD_FILE: MSMg01no060_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCATTTAGACCCAGAGTCTCCCCTGTCATCTAAGCTAGATATT
CTTTTCCTTACTGGCCATCCATCTCTGTCTGCAGCCCCTTTATCAACCTA
TCACCAAAATCAGCTAATTTTACCCCCTAAAAGTGTGTCTCTCTTTTAGC
AGCTTACAGCATCAGCTGCACAGCAGAGTCACCTGGAAACCTGGAAAGGT
GCCAGTGCGTCAGTTTCATGTTTATTTGGTCTGAGAGAGCGAAATGAGGC
TAGGAAGGCAGGATATTGCAAAGCTCCTTATGCATTCTAATAGGAAGCCT
TAGTGGAGAAACAAGTGCTTGCCCTGTCTGTCTCCTCACTTGCATTATCA
CCCAGCCTCAGCCCCCCACAGTTTCACACATGGATTATAAAAACCACTAT
CAGTTGGGTTTCTGGTCTCAAGGGTTATTCACTTCAACTTCATCCTTCAC
ACAGGATAAAAGCACAGAAGCTGTTGAAATATGCCTATTTCTTTTCCTTT
TAAAACTTTCCCCATGACTGCCCTCTAATAACGGCTAAAGCCTCTTTTAA
CAAGTCCAGCAGTAAACGCTTCCGTGTGTTCTCTATCTGACAATGCATAG
TCTCGTTCATTGTCAGGTTTTTAATACAACTGAGCATCACTGAAATGTTT
ATTTTTTTCTTTTTCNTGAGGGA
CGCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCTCATTTTT
TAATAGGGTTATTTGGTTTTCTGGAGTCCAACTTCTTGAGTTCTTTATAT
ATATATATTGAATATTAGTCCTTTATCGGATACCCAAGATAAAATTTGCA
AAAACTCATGAAATTCAAGAAGAAGGGAAACCAAAGTGTGGATACTTTGA
TCTTTCTTAGAAGGGGGAACAAAATAGCCTTGGAAGGAGTTACAGAGACT
AAGTTTGCAGCTGAGACCTAATAAAGGACTATCAATAGACTGCCCCCCAG
GGGATCCATCCCATAATCAACCACTAAACCCAGACACCTATTGCATATGA
CAACAAGATTTTACTGACAGGACCCTGATATAGCTGTCTCCTGTGAGACT
ATATACCAGTGCCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTAT
TGGATGGAACACAGGGTCCCCAATGAAGGAGGTAGAGAAAGTAACCAAGA
AGCTGAAGCGGTCCGCAGCCCCATAGGAGGAAAAATATTAAGTAACCCGT
ACCCGCAGAGCTCGTGTCTCTAGCTGCATATGTAACAGAGGATGGCCTAG
TCTCGCCGTCATGACAGGAAAAGCCCTTGGTCTTGGCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_b04.b1 MSMg01no060_b04.b1 CHROMAT_FILE:
MSMg01no060_b04.b1 PHD_FILE: MSMg01no060_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:43 2005
         (667 letters)



>mm_chr6_76638084_76639150
          Length = 1067

 Score = 1048 bits (542), Expect = 0.0
 Identities = 548/550 (99%)
 Strand = Plus / Minus

                                                                        
Query: 118  ctaattttaccccctaaaagtgtgtctctcttttagcagcttacagcatcagctgcacag 177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 ctaattttaccccctaaaagtgtgtctctcttttagcagcttacagcatcagctgcacag 1008

                                                                        
Query: 178  cagagtcacctggaaacctggaaaggtgccagtgcgtcagtttcatgtttatttggtctg 237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 cagagtcacctggaaacctggaaaggtgccagtgcgtcagtttcatgtttatttggtctg 948

                                                                        
Query: 238  agagagcgaaatgaggctaggaaggcaggatattgcaaagctccttatgcattctaatag 297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  agagagcgaaatgaggctaggaaggcaggatattgcaaagctccttatgcattctaatag 888

                                                                        
Query: 298  gaagccttagtggagaaacaagtgcttgccctgtctgtctcctcacttgcattatcaccc 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  gaagccttagtggagaaacaagtgcttgccctgtctgtctcctcacttgcattatcaccc 828

                                                                        
Query: 358  agcctcagccccccacagtttcacacatggattataaaaaccactatcagttgggtttct 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  agcctcagccccccacagtttcacacatggattataaaaaccactatcagttgggtttct 768

                                                                        
Query: 418  ggtctcaagggttattcacttcaacttcatccttcacacaggataaaagcacagaagctg 477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  ggtctcaagggttattcacttcaacttcatccttcacacaggataaaagcacagaagctg 708

                                                                        
Query: 478  ttgaaatatgcctatttcttttccttttaaaactttccccatgactgccctctaataacg 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  ttgaaatatgcctatttcttttccttttaaaactttccccatgactgccctctaataacg 648

                                                                        
Query: 538  gctaaagcctcttttaacaagtccagcagtaaacgcttccgtgtgttctctatctgacaa 597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  gctaaagcctcttttaacaagtccagcagtaaacgcttccgtgtgttctctatctgacaa 588

                                                                        
Query: 598  tgcatagtctcgttcattgtcaggtttttaatacaactgagcatcactgaaatgtttatt 657
            ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 587  tgcatagtctcgttcattgtcaggtttttaatacaaccgagcatcattgaaatgtttatt 528

                      
Query: 658  tttttctttt 667
            ||||||||||
Sbjct: 527  tttttctttt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)