Query= MSMg01no060_b15.b1 MSMg01no060_b15.b1 CHROMAT_FILE:
MSMg01no060_b15.b1 PHD_FILE: MSMg01no060_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:45 2005
(588 letters)
>mm_chr6_88343545_88344538
Length = 994
Score = 1069 bits (553), Expect = 0.0
Identities = 579/591 (97%), Gaps = 6/591 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagtccccccccggtgtccgtacctttgagtgggtggcctctggatgctgcttc 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ggaattcagtcccagtccggtgtccgtacctttgagtgggtggcctctggatgctgcttc 735
Query: 64 ttgcaccttcatgccatgctggcatgggttgtattctctgggacttcccgtgtgtgcttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttgcaccttcatgccatgctggcatgggttgtattctctgggacttcccgtgtgtgcttt 675
Query: 124 cagaggccagggtgtgaactgaagtggcctttgggctacattgtcacggatccccttcct 183
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 674 cagaggccagggtgtgaactgaagtggcctttgggctgcattgtcacggatccccttcct 615
Query: 184 cctttcatcgtgccgggtgctgtgctgtactagttcatagcatgagcaggaaaaggtcca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cctttcatcgtgccgggtgctgtgctgtactagttcatagcatgagcaggaaaaggtcca 555
Query: 244 atcacctggagcagatgcttacagagcctctgtatgagggccgctgcctgttgtcaggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atcacctggagcagatgcttacagagcctctgtatgagggccgctgcctgttgtcaggaa 495
Query: 304 gtatatagctgtgggaagagatgccaaggaagatgtagaacaagtttctccctgtcacca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtatatagctgtgggaagagatgccaaggaagatgtagaacaagtttctccctgtcacca 435
Query: 364 gtgccaccctacatggtagatgggttcattcgtggcacatgctctagagcactgcattgc 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtgccagcctacatggtagatgggttcattcgtggcacatgctctagagcactgcattgc 375
Query: 424 catcttccctgtgattcctggtccagccaacttcctttccctggcacagtggtagccacc 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tatcttccctgtgattcctggtccagccaacttcctttccctggcacagtggtagccacc 315
Query: 484 tcccaaatagtctccctgcaacagtcttttctt------caataaccccactactcatgt 537
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 314 tcccaaatagtctccctgcaacagtcttttcttcaataacaataaccccactactcatgt 255
Query: 538 gacagactacacatcagcaaactacagatcatgccattcctccacctaacg 588
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gacagactacacatcagcaaactacagatcatgccattcctccacctaacg 204
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 57 ctgcttcttgcaccttcatgccatgctggc 86
||||||||||||||||||||||||||||||
Sbjct: 146 ctgcttcttgcaccttcatgccatgctggc 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 588
Length of database: 994
Length adjustment: 10
Effective length of query: 578
Effective length of database: 984
Effective search space: 568752
Effective search space used: 568752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_b15.g1 MSMg01no060_b15.g1 CHROMAT_FILE:
MSMg01no060_b15.g1 PHD_FILE: MSMg01no060_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:45 2005
(523 letters)
>mm_chr6_88169050_88169971
Length = 922
Score = 996 bits (515), Expect = 0.0
Identities = 521/523 (99%), Gaps = 1/523 (0%)
Strand = Plus / Plus
Query: 1 tctggcgataagcagatagcatcggggtgattagaatccttttaaaaagccactccatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggcgataagcagatagcatcggggtgattagaatccttttaaaaagccactccatta 260
Query: 61 attagagagacagaggggcctctggctgcctaatcagcctccatcagcttgcctggggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagagagacagaggggcctctggctgcctaatcagcctccatcagcttgcctggggag 320
Query: 121 ggctttctggggctgctgtgtgaccttgggtgtgccctgccctctctgggcctacttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctttctggggctgctgtgtgaccttgggtgtgccctgccctctctgggcctacttctg 380
Query: 181 tactgagctgggctctgctgacatcacccagttatctgaggtcctttctcttcccagatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactgagctgggctctgctgacatcacccagttatctgaggtcctttctcttcccagatt 440
Query: 241 cctttctgagactctagacttgagacatcagatgttgaatccccagagaggaggaagaag 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctttctgagactctagact-gagacatcagatgttgaatccccagagaggaggaagaag 499
Query: 301 gggactcaccatcccactagtgaaggaggatggagatttacacaatggaagtgacctcag 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 gggactcaccatcccactagtgaaggaggatggagatttacagaatggaagtgacctcag 559
Query: 361 agtcagggcatgcctgatgaacatgctctgcccctcagatgctatgcttctcccacttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtcagggcatgcctgatgaacatgctctgcccctcagatgctatgcttctcccacttgg 619
Query: 421 accccaaatactgttcagactttgggaccccaggatgctaattgggacctctttgtagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 accccaaatactgttcagactttgggaccccaggatgctaattgggacctctttgtagaa 679
Query: 481 ggggaagtcacctcggcatgctgccaccaagtggctgtccagt 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggggaagtcacctcggcatgctgccaccaagtggctgtccagt 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 922
Length adjustment: 10
Effective length of query: 513
Effective length of database: 912
Effective search space: 467856
Effective search space used: 467856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
