ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACCG
CGGAATTCTGAAGAGAATGCCACGATTAATTTATAGCTTGATACACATTT
TTGACCAAATAGAGAAGAAAGCGTAAGACTGAAACTGGTTTATATGGAAG
TTCTGCTCTTCTGTGTCGCACTTGCTTGTAATTTTGCTTATGTATTTAAT
TTCTTTAAGCATTGCTTTCCTCACTATAAAATATTGATGGCAATTCCAAG
CTTAAAGTTTAATGACTTTTAGAGATATGACTCCCAGCCAACCAGCATGA
GAAAAGACCCATTTATAGACACCCCCAGGCTAACAAACATGCTCTGTCTC
AACTTTCTGAACAATGCTTCCTTCAGATTATCTCAGGGAAATGCTTACTG
TCCTCTCCCTCTCATATTATCTTAGTAATCTCTTATTTTTTTTTCTACTT
TTCCATTTGTCACAAATGTACTTTAATATCTGAATGATTATTTTTATTTT
CATCTGTGTTTTTCACAAGTCTCTTTTCTCATGGTTGTTGAGTGTTTTTT
TTTTTTTCCTTTCTTCTTTCCTGGGAACATGAACCCCAGAACTTTCTGCC
TGTTAGAAATTAATCTCTGAACTGCAGTTCCAAGTCCCACCACTGATTTT
TAACCAAAGGAGGTTTTATTTGACCCATGGGATTAAAAAAAAACCGTAAA
TATGGGCGTGCGTGCGAGTGTGAAATAAATAATCACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATGAAATTCTTAGGCAAATGGAAGGAACTAGAAAA
TACCATCCTGAGTGAGGTAACCCAGTCACAAAAGAACACAAATGGTATGT
ACTCACTGATAAATGGATATTAGGAAAAAAAGCTCAGAATACCCATGATA
CAACTTACAGACCATATGAAGCTCAAGAAAAAGGAATACCAAAGTATGAT
CTTTCAGCCCTACTTAGAAAGGGGAATAAAATACAGGAGGTACAGAGAGG
AAGGGATCTTGGAGGAAGAGATGAGGGGGGACAGACAAAGGAGGACACAG
GTGTGGAAGGAGCCAGGGAGAAGTACAGAGGGTCAGAAAATTGAATGAAG
GTGTATAGCAGTGGCCCATGGAGAACTTGGAGTAGCCACAAGAAAGTCCC
AGATGCCAGAAAAACAAGAGGTACATAGCACGCAACAGGCAGGGATGACA
TTAGCTGAAATACCCAACAAAGGGGAGAGAGAACCTGTAGAGTCCATATA
CAGAGGATAGGCACAGCCCCCAGTTGAGGGATGAGGCCACCCATCCATCT
CAAAAATATTAATCCAGAATTGCCCCAATTTAAAGGACATGCAGGGACAA
AGAGTAGAGTAGAGACTGAAGTCTCTCCCATCCAAACACTTTACCTAGGG
ATCATTCCATCTGCAGACATCAAACCCAGACACTATTGCTAAT

Query= MSMg01no061_d22.b1 MSMg01no061_d22.b1 CHROMAT_FILE:
MSMg01no061_d22.b1 PHD_FILE: MSMg01no061_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:10 2005
         (509 letters)



>mm_chr6_12676101_12677006
          Length = 906

 Score =  934 bits (483), Expect = 0.0
 Identities = 499/505 (98%), Gaps = 3/505 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctgaagagaatgccacgattaatttatagcttgatacacatttttgaccaaatag 62
           |||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaattctgaagagaatggta-gattaatttatagcttgatacacatttttgaccaaatag 646

                                                                       
Query: 63  agaagaaagcgtaagactgaaactggtttatatggaagttctgctcttctgtgtcgcact 122
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 645 agaagaaagcgtaagactgaaagtggtttatatggaagttctgctcttctgtgtcgcact 586

                                                                       
Query: 123 tgcttgtaattttgcttatgtatttaatttctttaagcattgctttcctcactataaaat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgcttgtaattttgcttatgtatttaatttctttaagcattgctttcctcactataaaat 526

                                                                       
Query: 183 attgatggcaattccaagcttaaagtttaatgacttttagagatatgactcccagccaac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 attgatggcaattccaagcttaaagtttaatgacttttagagatatgactcccagccaac 466

                                                                       
Query: 243 cagcatgagaaaagacccatttatagacacccccaggctaacaaacatgctctgtctcaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cagcatgagaaaagacccatttatagacacccccaggctaacaaacatgctctgtctcaa 406

                                                                       
Query: 303 ctttctgaacaatgcttccttcagattatctcagggaaatgcttactgtcctctccctct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctttctgaacaatgcttccttcagattatctcagggaaatgcttactgtcctctccctct 346

                                                                       
Query: 363 catattatcttagtaatctcttatttttttttctacttttccatttgtcacaaatgtact 422
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 345 catattatcttagtaatctctta--tttttttctacttttccatttgtcacaaatgtact 288

                                                                       
Query: 423 ttaatatctgaatgattatttttattttcatctgtgtttttcacaagtctcttttctcat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttaatatctgaatgattatttttattttcatctgtgtttttcacaagtctcttttctcat 228

                                    
Query: 483 ggttgttgagtgttttttttttttt 507
           |||||||||||||||||||||||||
Sbjct: 227 ggttgttgagtgttttttttttttt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 906
Length adjustment: 10
Effective length of query: 499
Effective length of database: 896
Effective search space:   447104
Effective search space used:   447104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)