BAC Information

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BAC

Clone NameMSMg01-061K12
Chromosome6 (Build37)
Map Location 72,507,845 - 72,508,521
singlet/doubletsinglet
Overlap geneCapg
Upstream geneVps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6
Downstream geneRbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061K12.T7 (MSMg01no061_k12.b1)MSMg01-061K12.TJ (MSMg01no061_k12.g1)
ACCAG287815AG287816
length717745
length of high quality
(start - end)
680 (38 - 717)74 (158 - 231)
definitionCHROMAT_FILE: MSMg01no061_k12.b1 PHD_FILE: MSMg01no061_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:41 2005CHROMAT_FILE: MSMg01no061_k12.g1 PHD_FILE: MSMg01no061_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
TTTACCCTAACTGCACCGGTTCAAATCAAGACAATCTTAGAATTAGCATC
TGACCTTCACCAGGGGCTGGAAGTGAATACCATTCTCCTTCTCAGAGGGC
GTCCTTCCCACCATCTCTCCTCCAGTCCCCACAAACCTACCTGAGCCCTG
GCCCAGCCTTCCCACAGCCTCTTCCCTTCAGCTCTGTACCCTGGCCACCT
GCTGATGCTCTGTGCAGGATCTCACACCAGGCCAATCCCCAGCAGGCCTG
CAGTGCCTACCTTATACAGGGCTGCGGCCTGGGCGTTGGTCTGGTCAGCT
GTAATGTCTTCCTCGGGGTTGCCCTCCTTCAGAGCAGGCTTGGGGCCCAG
AACCTGAACCGCCAGGCAGGATTACTGGGGCTTCTGCACCCCAATTTTCC
AAGTCACCACATGCAGGGCCACCTGTGTTCTGCACTGGGAAAAGCAATGG
GCCCAGCCCACCTACCCGACAGCCTCTTGCCCTGAGAACACATCCCCAGA
ACACAAAGGTACCCCATGAGCTAGGGCTGAGTAGGAACCCAGACACCCCC
ACCCCTGCCAATCCTCTGTCAGCCATCTTCATGCTCCCAGCTTATCGCTG
TCTCTCCTGACCACATCCAAACAGCACCTCCCAGCTGCCCACCCCAAGAT
CCCCAACCTGAATCATC
AGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACCCCCTTCTATTCCTACTGTTTATCAGGGCA
CAGCTAGAATGTTGATATCTCAGTGTGGGGGCGTTGGCGTGGGGTAGAGG
AGATTCAGATCTCAAAAAACAAACAACAACAACAACAACAACAACAACAA
CAACAACAAAAAACCCCAATAATAATGAGGAAGAAGACGAAGAGTAGCAG
GACATCTAGGAATATGGTTCAGGTGCCAGAGTGCTCGCTTACTATGCTCG
AAGGCTCTACTTTTACTGGTGGCGCATGCCTGCGATGAGAGCAGAGGGAT
CAGGACCTCCCCCCCATCTTTAGCTAGAAAAGTGAGTGTGATGTAAACTT
GGCCTGACCCCCCCCCTCCCCTTTTTAAAAAGCACAAAAACTAGGCACCA
TGACTTACGCTTACAATCTCAAACTTGCCAACCCCATGCACGAAGCTGAC
CTACACCGACACCAAAACACACAAACAGCACCCCATGACGCTGCACCCCA
ATTCGATCTTCAAAATATGACCACCGCGACCGGCAAGCTCTACCACTCCA
TACACACGCACCCTCACCTAGAAAAAACTGTAGAACCCATCCTTTCCTAT
ACGAACAATAACCACACCCACCCTTGTGTCCCCCCACCCCCGCCGCCCCC
AAACTCTCCTCTTATAAACTCCCCCACCACCCCTACCAAAGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_k12.b1 MSMg01no061_k12.b1 CHROMAT_FILE:
MSMg01no061_k12.b1 PHD_FILE: MSMg01no061_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:41 2005
         (680 letters)



>mm_chr6_72507641_72508721
          Length = 1081

 Score = 1216 bits (629), Expect = 0.0
 Identities = 665/679 (97%), Gaps = 5/679 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactttaccc---taactgcaccggttcaaatcaagacaatcttagaattagca 61
           |||||||||||||  |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 gaattccacttta--caagtaactgcaccggttcaaatcaagacaatcttagaattagca 824

                                                                       
Query: 62  tctgaccttcaccaggggctggaagtgaataccattctccttctcagagggcgtccttcc 121
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 823 tctgaccttcaccaggggctggaagtgaataccattctctttctcagagggcgtccttcc 764

                                                                       
Query: 122 caccatctctcctccagtccccacaaacctacctgagccctggcccagccttcccacagc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 caccatctctcctccagtccccacaaacctacctgagccctggcccagccttcccacagc 704

                                                                       
Query: 182 ctcttcccttcagctctgtaccctggccacctgctgatgctctgtgcaggatctcacacc 241
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 703 ctcttcccttcagctctgtaccctggccacctgcagatgctctgtgcaggatctcacacc 644

                                                                       
Query: 242 aggccaatccccagcaggcctgcagtgcctaccttatacagggctgcggcctgggcgttg 301
           |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 643 aggccaatccccagcaggcctgtagtgcctaccttatacagggctgcagcctgggcgttg 584

                                                                       
Query: 302 gtctggtcagctgtaatgtcttcctcggggttgccctccttcagagcaggcttggggccc 361
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 583 gtctggtcagctgtaatgtcttcctcggggttaccctccttcagagcaggcttggggccc 524

                                                                       
Query: 362 agaacctgaaccgccaggcaggattactggggcttctgcaccccaattttccaagtcacc 421
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agaacctgaagagccaggcaggattactggggcttctgcaccccaattttccaagtcacc 464

                                                                       
Query: 422 acatgcagggccacctgtgttctgcactgggaaaagcaatgggcccagcccacctacccg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 acatgcagggccacctgtgttctgcactgggaaaagcaatgggcccagcccacctacccg 404

                                                                       
Query: 482 acagcctcttgccctgagaacacatccccagaacacaaaggtaccccatgagctagggct 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acagcctcttgccctgagaacacatccccagaacacaaaggtaccccatgagctagggct 344

                                                                       
Query: 542 gagtaggaacccagacacccccacccctgccaatcctctgtcagccatcttcatgctccc 601
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gagtaggaacccagatacccccacccctgccaatcctctgtcagccatcttcatgctccc 284

                                                                       
Query: 602 agcttatcgctgtctctcctgaccacatccaaacagcacctcccagctgcccaccccaag 661
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 283 agcttatcgctgtctctcctgaccacatccaaacagcatctcccagctgcccaccccaag 224

                              
Query: 662 atccccaacctgaatcatc 680
           |||||||||||||||||||
Sbjct: 223 atccccaacctgaatcatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space:   717570
Effective search space used:   717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)