BAC Information

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BAC

Clone NameMSMg01-061L22
Chromosome6 (Build37)
Map Location 22,629,414 - 22,629,905
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnd2, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959
Downstream geneLOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061L22.T7 (MSMg01no061_l22.b1)MSMg01-061L22.TJ (MSMg01no061_l22.g1)
ACCAG287883AG287884
length739753
length of high quality
(start - end)		493 (48 - 540)---
definitionCHROMAT_FILE: MSMg01no061_l22.b1 PHD_FILE: MSMg01no061_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:48 2005CHROMAT_FILE: MSMg01no061_l22.g1 PHD_FILE: MSMg01no061_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATACGCGGA
ATTCCTTTGTTATTATCATATCTTGGTGTTTTCCTTAGTCTGTAGATTTC
TCTTGTGAAATATTGGTTGGGGTTTCACATTATATTTGTTCACAAGGAAT
AGAAGGATTTTTTATTTTGTGCTTGTTTTTATCTTAACTGGAAAATCTTA
GAAAACTATTGAAAATATGCTGAATTAAAAGACAGGATAGAATTTCCCTC
TTGGATTTTTAAGGTTCCTATTCTCAAATAGAACACGTTCTTTTTAATAC
CTATTCTCGTTCAGCCTTGATGAAGCCTTTTCTATTTCTATTTCTCTTTC
ACTGTCAATTTGGGATATTCCAGTTTCCAGGAAAATTATGTATTTTGCCT
GTAGACTTTTTCTCTCAGTAAGGAGAAGAATTCCTTTCACAATCAATTTT
TCAAGTTTGCTCTCTGACAGATAATTTTTTTGATCATTGTTCTGTATCTC
ATGGAACAGTAGTTAAATTCTGTTCTCTACACCTTATAGTTAGTGGCTTG
TCGGTTTACGGTTCCATCAATACATTTTGGATGCATTAATTCTATGTTTC
TCTGTTTTCTATTAAAAATTCTGGCTATAAATTTTCCTTTTGCTTTTACT
CTTTTTAAAAATTTTTTTCCTGACCTCTTTCATTAAATTATGAAATACAT
TTATATATTGTATATAATCTGTCTACCTTAGATAATATN

TAGTACGCGTGGCGCCCGTCTAATTACGGGTATAGTCCGCCTTGTGGGCG
GGCTTTTAGCCCGTATTGGGGTCCCGCGATGCGGTTGTTAGGGGGGCGGT
ATGGGATATAGCATGAAGGGTGGTTTTGGCCTTCTTTGCGTTAGTATTTC
TTGCGCCGCTTGAAATGGATCCCTCTTTGCCCGTGCATTGCCTGGGCGTG
CCGTTGATCCCGTTGTTCTGGGTGCGTCTTTGCCCGTTGCTCCTTTTGAC
GCACCCCGTCTTTTGCCCGTCTCGCCCCTTTCGCGACTTTCGTTTTTTCG
GGTGGCGCGTTTTTTTTGCGCCGTATCCCCCGCTACCCATTTAGGCTTTT
TTTTTACTTTCCCGTTCCATTGTCCTTCGCCGGTGTTGGCGTTTTGCGCG
TATTTTTCAACGTTGGCGCGTTACAGTCTTAAGTGATCCCAGTGGGTAGG
CACTTTGTCGAGGCGTATCTGTGTGTCGCGCGCTTGTCACCGTGTTTTTG
GCGGTGTTGGGTGCGGTTTGCGCTTTCCGCGGATTGTGCTCACGTTTAGC
GAGGTTTTTTTCGACCCGTTTGGCCTTCGATTTCGTCAGCTTCGGCTCCG
GCTTCGTCGTGCGTTAGATCGCATTTTTTCCGGGGCGAAGTGATCGTTTC
CGTATCGGGGACCGAATAAATTTACCAGAGTGTGGTGTCGAGTTAGACGT
ATACGGCGCGTTTTGCTCTGTCTTTCGCTTTGTCGTTTTCCGGTACGTGA
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_l22.b1 MSMg01no061_l22.b1 CHROMAT_FILE:
MSMg01no061_l22.b1 PHD_FILE: MSMg01no061_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:48 2005
         (493 letters)



>mm_chr6_22629213_22630105
          Length = 893

 Score =  899 bits (465), Expect = 0.0
 Identities = 486/493 (98%), Gaps = 2/493 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattcctttgttatta-tcatatcttggtgttttccttagtctgtagatttctcttgtg 60
           |||||||||||||| || | |||||||||||||||||||||||||||||||| |||||||
Sbjct: 202 gaattcctttgttaataat-atatcttggtgttttccttagtctgtagatttttcttgtg 260

                                                                       
Query: 61  aaatattggttggggtttcacattatatttgttcacaaggaatagaaggattttttattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatattggttggggtttcacattatatttgttcacaaggaatagaaggattttttattt 320

                                                                       
Query: 121 tgtgcttgtttttatcttaactggaaaatcttagaaaactattgaaaatatgctgaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgcttgtttttatcttaactggaaaatcttagaaaactattgaaaatatgctgaatta 380

                                                                       
Query: 181 aaagacaggatagaatttccctcttggatttttaaggttcctattctcaaatagaacacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagacaggatagaatttccctcttggatttttaaggttcctattctcaaatagaacacg 440

                                                                       
Query: 241 ttctttttaatacctattctcgttcagccttgatgaagccttttctatttctatttctct 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ttctttttaatacctattctcgttcagccttgaggaagccttttctatttctatttctct 500

                                                                       
Query: 301 ttcactgtcaatttgggatattccagtttccaggaaaattatgtattttgcctgtagact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcactgtcaatttgggatattccagtttccaggaaaattatgtattttgcctgtagact 560

                                                                       
Query: 361 ttttctctcagtaaggagaagaattcctttcacaatcaatttttcaagtttgctctctga 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttctctcagtaaggagaagaattcctttcacaatcaatttttcaagtttgctctctga 620

                                                                       
Query: 421 cagataatttttttgatcattgttctgtatctcatggaacagtagttaaattctgttctc 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 cagataatttttttgatcattgttctgtatctcacggaacagtagttaaattctgttctc 680

                        
Query: 481 tacaccttatagt 493
           |||||||||||||
Sbjct: 681 tacaccttatagt 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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