Query= MSMg01no061_o24.b1 MSMg01no061_o24.b1 CHROMAT_FILE:
MSMg01no061_o24.b1 PHD_FILE: MSMg01no061_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:03 2005
(626 letters)
>mm_chr6_119796712_119797737
Length = 1026
Score = 1180 bits (610), Expect = 0.0
Identities = 619/622 (99%)
Strand = Plus / Minus
Query: 5 gaattcgctgaggtaacagaatccctttgcgttgacttggggttggtaaattgggagcgc 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gaattcgctgagggaagagaatccctttgcgttgacttggggttggtaaattgggagcgc 669
Query: 65 gagtgagtgaggtttttacacacaagaaggaagatgttggtgtttagacaacttcattct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gagtgagtgaggtttttacacacaagaaggaagatgttggtgtttagacaacttcattct 609
Query: 125 atagcaaccaaccatgaaggagtgagtctcattactcttagcccctcaaaagtgctatca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atagcaaccaaccatgaaggagtgagtctcattactcttagcccctcaaaagtgctatca 549
Query: 185 gccttttcttttccttgcccccctcaaccccctctcctgtgcttgatctctttgtaccat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gccttttcttttccttgcccccctcaaccccctctcctgtgcttgatctctttgtaccat 489
Query: 245 ttttcatttttgagttgacccgttaagaaaaggccctggactcagagtaatagttgcagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttttcatttttgagttgacccgttaagaaaaggccctggactcagagtaatagttgcagg 429
Query: 305 tggttgtggctgattgctttgagcgaactgtgaacagttctgttggagatgactgtatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tggttgtggctgattgctttgagcgaactgtgaacagttctgttggagatgactgtatga 369
Query: 365 aattgcttaagcgtttaaagtgcaactgtctcttacatcttgtttttcaatagaccttga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aattgcttaagcgtttaaagtgcaactgtctcttacatcttgtttttcaatagaccttga 309
Query: 425 tacattttgcgtttatttaatcattatgtgtgtgtgcctggcatacacacgatagattac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tacattttgcgtttatttaatcattatgtgtgtgtgcctggcatacacacgatagattac 249
Query: 485 tccctccctctttgaggtcaaaggtcaaagcttttgggacttggttctcccactgtggat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tccctccctctttgaggtcaaaggtcaaagcttttgggacttggttctcccactgtggat 189
Query: 545 ggctgggatcaaactttggttattagacttgtgacataagcacttttttctgctgagtta 604
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 188 ggctgggatcaaactttggttattagacttgtgacataagcacttttttctgttgagtta 129
Query: 605 tctggatgtccctatttttccg 626
||||||||||||||||||||||
Sbjct: 128 tctggatgtccctatttttccg 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_o24.g1 MSMg01no061_o24.g1 CHROMAT_FILE:
MSMg01no061_o24.g1 PHD_FILE: MSMg01no061_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:03 2005
(592 letters)
>mm_chr6_119726929_119727923
Length = 995
Score = 1081 bits (559), Expect = 0.0
Identities = 585/597 (97%), Gaps = 7/597 (1%)
Strand = Plus / Plus
Query: 1 cagtctacttcactccttaagagcactttttccattcatctctgacactttgaggaaggt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cagtctacttcactccttaagagcactttttccattcatct--gacactttgaggaaggt 258
Query: 61 acgcttggacaatacagactagatagtgaagaaattacaagaaaaactctagaatcagat 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acgcatggacaatacagactagatagtgaagaaattacaagaaaaactctagaatcagat 318
Query: 121 tgctggtgtcaatcagaccccacc-----tctctctggtggcttcctggacatcatctgt 175
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 319 tgctggtgtcaatcagaccccaccccacctctctctggtggcttcctggacatcatttgt 378
Query: 176 aaattagtgtagatcactctaccaggttataagatgcttttagtaagtatctaagtggaa 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaattagtgtagatcactctaccaggttataagatgcttttagtaagtatctaagtggaa 438
Query: 236 attatattattattacttatcaaaatgcttagaaatacagttttaagttcactacacaga 295
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 439 attatattattattacttatcaaaatgcttagaaatacagctttaagttcactacacaga 498
Query: 296 aagctaaagcagatttagtaatttaaaataagttatcacactagttctaatctatgagct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagctaaagcagatttagtaatttaaaataagttatcacactagttctaatctatgagct 558
Query: 356 aacttaaataggctaattactctctatacagctatcttaaagaaaatgccatttgttaca 415
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 559 aacttaaataggctaattactctctatacagctatgttaaagaaaatgccatttgttaca 618
Query: 416 aagtctcctaatgaaaacttatattgtctccatgtagaactaaagcagtttctcaagaat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagtctcctaatgaaaacttatattgtctccatgtagaactaaagcagtttctcaagaat 678
Query: 476 ttcaaatgcaggaaagttgtaggtgctgagcctagagacatttacacattcctgtaccta 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttcaaatgcaggaaagttgtaggtgctgagcctagagacatttacacattcctgtaccta 738
Query: 536 aaaagaatggagggaaaacattcatataaatcaatgtatatctagtcaacaagagga 592
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaaagaatggaaggaaaacattcatataaatcaatgtatatctagtcaacaagagga 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 995
Length adjustment: 10
Effective length of query: 582
Effective length of database: 985
Effective search space: 573270
Effective search space used: 573270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
