BAC Information

Click to search

BAC

Clone NameMSMg01-063A19
Chromosome6 (Build37)
Map Location 37,545,968 - 37,712,638
singlet/doubletdoublet
Overlap geneYbx1-ps2
Upstream geneLOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046
Downstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063A19.T7 (MSMg01no063_a19.b1)MSMg01-063A19.TJ (MSMg01no063_a19.g1)
ACCAG288880AG288881
length671653
length of high quality
(start - end)
324 (38 - 361)438 (55 - 492)
definitionCHROMAT_FILE: MSMg01no063_a19.b1 PHD_FILE: MSMg01no063_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:15 2005CHROMAT_FILE: MSMg01no063_a19.g1 PHD_FILE: MSMg01no063_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,545,968 - 37,546,281)(37,712,250 - 37,712,638)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATCA
TTGTCATGCAATAAATTCTGACACCACTGGAAGAGCCAAATGTGTTCATC
TGTGTTTCTGACACAGCACACACATGACAGGCAGAAAGATGTGATACCTT
TTCCTGCCATCATAAGGGCCACAGCAAACACTTATAAAAAAACAAAAAAC
AAAACAAAACAAAACAAAAAGACAAATTAACAGGAGAAAAATATAATGGA
TTTATTTCATCAAAGTAGCACATGAGATTTCAGAGACAAAGTGACCCATG
GGGAAATGATCAGTGTATGCTTACATTTGATAAGGATGAATACATGAATA
GAACTGGATTGGATGGAGAACATGCAACCTTGTGGTCCCAGACTAAGAAC
GTAAACAAAACAAGACCTGTCTAAATTCTTCAGGCTTCTCTGTCCAGCTT
TCCCTTCTCTGAGGTACAGGACAGAATCCTTCCTCGAGGCCTTTTGTCCT
ATGTCCTACAACATAAGTCAGACAGCACTTTTTTATTTTTATTTTTTTAA
ATGGCTGTCTCTTATACTAGGAGGTGGGGAAGAAAAGAGCAGTGGTCTTC
ACCCTGTGGCGTCACGACCTCTTTGAGGGCCACATAACAGATATCCTGCA
TATCAGATATGACAGAGCTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGGAGGTGGAAGCAGGGATATGAGGAGTTCAATGTCATGCTCAGCT
ACATCCCAAATTCAAGGAAGGACAACCTGACCTACAGAAAAGCCTGTATC
AAAACAAATATACAGTCCCCAAAGCAAACAAAACAAACTCTAACAAAAAA
GGGAACAGGTGATGTAACCACATACCCTAAAACCTTCAGCACTGGGGCTA
GAGAGATGACGAAATAGTTATAAGCATTTGCTACTCTTGCATAGAACCCG
AGTTTGGTTCCCAGCACTATTTGGTAGCTCACAACCATCTAGGATATCTG
ACTCTCTCTTTTGGGCTCTAAGGGTACCAGATGCTGCACACAAATACAGA
CATAAAATAAAATACACCTTTAAAAACAAATTAAGTGGAAGATACTTTAG
CACATGTTTTTATGGATAGGACAAGCTCAACTATTTGGGTCTGTAGTCTA
TGGTCTCATGGAAATAGACAGTTCTGGAGCTGGATCAATAGAGAACAGAG
AAGCTGATGCTACTCAATTCTTGCTCTCAGAACCTCCCACTGTAAAATGA
AAGTTGAACTAGTCCTGGGCCTCACACATTACAACATGAAGACTCTAGTG
GGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_a19.b1 MSMg01no063_a19.b1 CHROMAT_FILE:
MSMg01no063_a19.b1 PHD_FILE: MSMg01no063_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:15 2005
         (324 letters)



>mm_chr6_37545758_37546481
          Length = 724

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  tcattgtcatgcaataaattctgacaccactggaagagccaaatgtgttcatctgtgttt 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tcattgtcatgcaataaattctgacaccactggaagagccaaatgtgttcatctgtgttt 270

                                                                       
Query: 71  ctgacacagcacacacatgacaggcagaaagatgtgataccttttcctgccatcataagg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctgacacagcacacacatgacaggcagaaagatgtgataccttttcctgccatcataagg 330

                                                                       
Query: 131 gccacagcaaacacttataaaaaaacaaaaaacaaaacaaaacaaaacaaaaagacaaat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gccacagcaaacacttataaaaaaacaaaaaacaaaacaaaacaaaacaaaaagacaaat 390

                                                                       
Query: 191 taacaggagaaaaatataatggatttatttcatcaaagtagcacatgagatttcagagac 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taacaggagaaaaatataatggatttatttcatcaaagtagcacatgagatttcagagac 450

                                                                       
Query: 251 aaagtgacccatggggaaatgatcagtgtatgcttacatttgataaggatgaatacatga 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaagtgacccatggggaaatgatcagtgtatgcttacatttgataaggatgaatacatga 510

                         
Query: 311 atagaactggattg 324
           ||||||||||||||
Sbjct: 511 atagaactggattg 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no063_a19.g1 MSMg01no063_a19.g1 CHROMAT_FILE:
MSMg01no063_a19.g1 PHD_FILE: MSMg01no063_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:15 2005
         (438 letters)



>mm_chr6_37712250_37713087
          Length = 838

 Score =  745 bits (385), Expect = 0.0
 Identities = 388/389 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaggtggaagcagggatatgaggagttcaatgtcatgctcagctacatcccaaattca 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aggaggtggaagcagggatatcaggagttcaatgtcatgctcagctacatcccaaattca 330

                                                                       
Query: 61  aggaaggacaacctgacctacagaaaagcctgtatcaaaacaaatatacagtccccaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aggaaggacaacctgacctacagaaaagcctgtatcaaaacaaatatacagtccccaaag 270

                                                                       
Query: 121 caaacaaaacaaactctaacaaaaaagggaacaggtgatgtaaccacataccctaaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caaacaaaacaaactctaacaaaaaagggaacaggtgatgtaaccacataccctaaaacc 210

                                                                       
Query: 181 ttcagcactggggctagagagatgacgaaatagttataagcatttgctactcttgcatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttcagcactggggctagagagatgacgaaatagttataagcatttgctactcttgcatag 150

                                                                       
Query: 241 aacccgagtttggttcccagcactatttggtagctcacaaccatctaggatatctgactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aacccgagtttggttcccagcactatttggtagctcacaaccatctaggatatctgactc 90

                                                                       
Query: 301 tctcttttgggctctaagggtaccagatgctgcacacaaatacagacataaaataaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  tctcttttgggctctaagggtaccagatgctgcacacaaatacagacataaaataaaata 30

                                        
Query: 361 cacctttaaaaacaaattaagtggaagat 389
           |||||||||||||||||||||||||||||
Sbjct: 29  cacctttaaaaacaaattaagtggaagat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)