BAC Information

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BAC

Clone NameMSMg01-063A21
Chromosome6 (Build37)
Map Location 74,125,374 - 74,125,684
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063A21.T7 (MSMg01no063_a21.b1)MSMg01-063A21.TJ (MSMg01no063_a21.g1)
ACCAG288884AG288885
length771821
length of high quality
(start - end)
317 (122 - 438)---
definitionCHROMAT_FILE: MSMg01no063_a21.b1 PHD_FILE: MSMg01no063_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:15 2005CHROMAT_FILE: MSMg01no063_a21.g1 PHD_FILE: MSMg01no063_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNCCCCNNNN
NNNNCCCNNNNNNNNTTCTTCNNNNNNTACATCTATAAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCGCGGAATTCAAATAAATAAGAAATAG
CATATTAATTTCATTCAAGAAGGACTCCATAATTTGAATATTCCTTTGCA
GCAAAAATGATCTAAGTAAATAGCTGAATTTTGGGGTCCTGTACTCATCG
CTGTCTCTGTATGCTTATAACTTTATTTCATCTTCACAATATATTATCGC
ACTATGGTTGACAGTTTTGTATCAAGTTGACACAAGCTAAAGTAATATGA
GAGGAGGCAACATCAATGTATAAAATGCCTTCATAAGTTCAAGCTGTAGG
AAAACCTGTAAAGAATTTCCTGAATTAGTAACTGATAGAGGAGGGCTCAG
TCCATTGTGGGTAGTGCCTCCCCTAGGCTGGTGGTCCAAAATTCTATATG
AAAGGAAGCCAGGAACAAGATAGTAAGCAGAAATCCTCCATGGCTTCCAC
GTCAGCTCTTTCCTCCAGGTCCCACCAAGGCCAACACAACTCATAGAGGA
AAGGTAAGCTTGAGTTCTTGTCTCGACTTCCTTGACTGTAACTTGGAGGT
GAAGCCAAAAACACCCCAATCCCTCCTCCACTTTATTCGCATGTGGCTAC
TCTATCATACCCTTACTAAATATTACCAAAAGGCTCATTCACCAATTTTA
AAACTTATATTACTCCCGAAA
NCCGGGGCNCCNNNNNNNNNNNNNNNNCCNNNNNCCCNNNNCCNNNNNNN
NNNNNNNNNNTCTATTATANTGNNNTANXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCTGTATTTG
TCANGCACTGGCAAAACTTCTCANAAAACANCTCTATCAAACTCCTGTCA
NCAAGCTCTTGTTGCCATCCACAATACTGTCTGCCTTTGCTGCTTCTTTG
TAAAATGGATTCATGAACTNCCCTCACCNCCCTCTGNATGNTCATCANCT
TCCNCAACACTCTCCGAATCCCCACCCCTTTAACCCCCCCTTCCCACGCN
AATTNNTTTCTCCTTCCAACAANNACCAACAATCCTACCTTTNNCCCTCC
CTCCCTCTTCACCCCCACCCTTTTTTTTTACCCCACCCCCCCCAAACTTT
TCCCCCTCTTCCCCCCTCCACACTTCTATACCACCCCAAATAAAAAACAC
CTTTTCNNCACCCCATTACCCCCCTTTTCTCCNCTCTTCCACAATCCCCC
CCCCTCCCCCCCCCCCTTCCCAACACCCCTCCTTCTCTCCCCCCTTTCTT
CTCCCACCCCTCTTCCCATCCACCTCATTTTCTCCACCCTTCTTCCCCAC
CTCCCCCCCCCACCCCTCCCCCTCCTCCTCCTCCCCTCCATATTCCACTC
CTTCACCCCCTCTACCTCCCTTCCCCCTACCCTTTTTCACCCACCACCCC
CTCTTCCCTCCCCCTCCTACCCCCCCCCCACCTCCTCCTCCCCTGGTGGG
CATTGACATGGGACGNGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_a21.b1 MSMg01no063_a21.b1 CHROMAT_FILE:
MSMg01no063_a21.b1 PHD_FILE: MSMg01no063_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:15 2005
         (317 letters)



>mm_chr6_74125168_74125884
          Length = 717

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaaataaataagaaatagcatattaatttcattcaagaaggactccataatttga 66
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 207 gaattgaaataaataagaaatagcatattcatttcattcaagaaggactccataatttga 266

                                                                       
Query: 67  atattcctttgcagcaaaaatgatctaagtaaatagctgaattttggggtcctgtactca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atattcctttgcagcaaaaatgatctaagtaaatagctgaattttggggtcctgtactca 326

                                                                       
Query: 127 tcgctgtctctgtatgcttataactttatttcatcttcacaatatattatcgcactatgg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcgctgtctctgtatgcttataactttatttcatcttcacaatatattatcgcactatgg 386

                                                                       
Query: 187 ttgacagttttgtatcaagttgacacaagctaaagtaatatgagaggaggcaacatcaat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgacagttttgtatcaagttgacacaagctaaagtaatatgagaggaggcaacatcaat 446

                                                                       
Query: 247 gtataaaatgccttcataagttcaagctgtaggaaaacctgtaaagaatttcctgaatta 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtataaaatgccttcataagttcaagctgtaggaaaacctgtaaagaatttcctgaatta 506

                      
Query: 307 gtaactgatag 317
           |||||||||||
Sbjct: 507 gtaactgatag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)