BAC Information

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BAC

Clone NameMSMg01-063G12
Chromosome6 (Build37)
Map Location 107,454,976 - 107,455,437
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063G12.T7 (MSMg01no063_g12.b1)MSMg01-063G12.TJ (MSMg01no063_g12.g1)
ACCAG289154AG289155
length698677
length of high quality
(start - end)
466 (44 - 509)298 (55 - 352)
definitionCHROMAT_FILE: MSMg01no063_g12.b1 PHD_FILE: MSMg01no063_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:45 2005CHROMAT_FILE: MSMg01no063_g12.g1 PHD_FILE: MSMg01no063_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGTGTATACCAGACTGGGCTTGAACTCACAGAGATCTGTTGGTCT
CCCATGTGCAGGGATGAAAATATTTTTAAAACTTAACATTGAAAAAACAA
TCTCTATGGTGCTGTAGTAATGTAAGCCAAGAACTTACCCAAGGAAATAT
AGGCTTGTTCCTATAACAACAAAAGGACCCAGATATAGCTGTCTCCTGAG
AGACTATGCCGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTA
TTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAG
GAGCTAAAGGGACCTGCAACCCTATAGATGGAACAACATAATGACCTAAC
CAGCACCCCGGAGCTCTTGACTCTAGCTACATATGTATCAAAAGATGGCC
TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTATA
TGCCCCAGTACAGGGGAATGCCAGGGTCAAAAAAAATGGGAATGGGTGGC
TAGGGAAATGGGTTCTCACTCCTCTTACCCACCCCTCTTTCATCATTCTC
TTCTTCCTTTATTTCCCCATTTTCCTATTACCTTCATAATTAATTCATTT
TCCATCTCACTCCCTTTCCCCCATTCCTCTCTTTTACCCTTTTTACCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCAGTAGCTGATGAGAAAGAAAAGGATAGAGAGAAGGTCATGTAT
ACCTCCCCACACTCTGGTTGGGCCCGACCACCTATTTCACCTTTTTCATA
AGTGTACAGATATACTTATATACATACACATAGGTATGCATGTACATACA
TATAGACAGAGATGCATACATTTAGTGGATGGAGCAGAGACCTAAAAGCC
ACACAGTATTTTTCTCTTAGCCTTATTTCACCTTTTCACACAAAAGTTCT
TCATAAAATTACCTCATAGATGAAGTGTTACACAAAAGGGGAGTTACAGA
ACAATATCAATAAGTTCAAAGCAGTGTTTCATTCTGTAAGCTCATTATAA
GTTCAAAGCAACAGTTTCACATGGCCTTGCTGTATCATAGTGGACACCTG
TGGCTTCATCCTTGGACCTAACCTAGGTGAATGTTTTTTCTTGATCATAA
ATCTGTCTCAAGCCTGTTTCTCTTCTTAGTGTAATTCATGAAATCTCATT
GTATTCCTTATTATGCACCCTTTACTTACTATTCTATTGAGGAGGGGCCA
CATTCCATTCTTAATACTCATATTAAATATTTCTGGCACAACAACTAAAA
CCGTATTGTTAAGCTTTCTTCCCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_g12.b1 MSMg01no063_g12.b1 CHROMAT_FILE:
MSMg01no063_g12.b1 PHD_FILE: MSMg01no063_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:45 2005
         (466 letters)



>mm_chr6_107454772_107455637
          Length = 866

 Score =  862 bits (446), Expect = 0.0
 Identities = 458/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtgtataccagactgggcttgaactcacagagatctgttggtctcccatgt 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtggagaccagactgggcttgaactcacagagatctgttggtctcccatgt 264

                                                                       
Query: 65  gcagggatgaaaatatttttaaaacttaacattgaaaaaacaatctctatggtgctgtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagggatgaaaatatttttaaaacttaacattgaaaaaacaatctctatggtgctgtag 324

                                                                       
Query: 125 taatgtaagccaagaacttacccaaggaaatataggcttgttcctataacaacaaaagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatgtaagccaagaacttacccaaggaaatataggcttgttcctataacaacaaaagga 384

                                                                       
Query: 185 cccagatatagctgtctcctgagagactatgccgggcctagcaaacacagaagtggatgc 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 cccagatatagctgtctcctgagagactatgcctggcctagcaaacacagaagtggatgc 444

                                                                       
Query: 245 tcacagtcagctattggatggatcacagggctcccaatggaggagctagagaaagtaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcacagtcagctattggatggatcacagggctcccaatggaggagctagagaaagtaccc 504

                                                                       
Query: 305 aaggagctaaagggacctgcaaccctatagatggaacaacataatgacctaaccagcacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 aaggagctaaagggacctgcaaccctatagatggaacaacataatgaactaaccagcacc 564

                                                                       
Query: 365 ccggagctcttgactctagctacatatgtatcaaaagatggcctagtcggccatcactgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccggagctcttgactctagctacatatgtatcaaaagatggcctagtcggccatcactgg 624

                                                     
Query: 425 aaagagaggcccattggacacacaaactttatatgccccagt 466
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaagagaggcccattggacacacaaactttatatgccccagt 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)