BAC Information

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BAC

Clone NameMSMg01-063M21
Chromosome6 (Build37)
Map Location 17,534,390 - 17,651,799
singlet/doubletdoublet
Overlap geneCapza2
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met
Downstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063M21.T7 (MSMg01no063_m21.b1)MSMg01-063M21.TJ (MSMg01no063_m21.g1)
ACCAG289449AG289450
length688675
length of high quality
(start - end)
319 (41 - 359)286 (55 - 340)
definitionCHROMAT_FILE: MSMg01no063_m21.b1 PHD_FILE: MSMg01no063_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:19 2005CHROMAT_FILE: MSMg01no063_m21.g1 PHD_FILE: MSMg01no063_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,534,390 - 17,534,703)(17,651,518 - 17,651,799)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGATTTTTCCAGATCAGTCACTGCATCTTTCTACGCCTTATTCTCCAAAC
TGGAAACCCTCATTTTCAATTTTTTTATTGTTATCTGTAATCTGCTTTGT
AGTCCAAGAAGATTCAAGACAGAAGGCCCTAGCATAAAATTACCTGCAAT
TAATAAATATAATAATAACTATAATGACAATACATAATAATCAATATAAT
TATAACAAAATAAAGGGGACAAAAGGTGAATACAATCAAAATACATTATG
CTCATGTATAAAAGTGTTACAATAAAATGTGTATGATTGGGTTATGCCAA
TAAAAACTTCTTTTTAAGCCAACAGTTTGGCTTTGCTTTTGTATAAAGTT
AAAAATCTTGAAATCAGACGCTGGCTTTCTTCATCATTTTAGAAAAATCA
AACTAATATGGGGAATTTCTCAAACCTGTGTGGCTTTCTGTGTCATGTAA
GCATATTGCGTTGTATTTTCCTTGATCTTCATTACAGCTCACAGATTTGA
TTGTAAATATTAAATATCCAGTAAAATTATTATCACTTGCTGATTGCCTG
CGTCTTTGTCTGATGCTCAGGCCAGCTTTACAGTCCTAGGCTCAAGGGTC
ATCCTGCATCGGATAATTCTGTGTGCCCGGACAATAGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGGGAACTGTACCCAGAACTTTAGTGCCATGAGGAGCCAGCTAGGA
TGGAGAAAGTTAAGAATAATAAAAAGAAACTGGGCTGTGCCTTGAAAGGA
ATCTTATAATTATTTCTATGTGGAAAGCTACCAATGAAACAAGAGGATCT
CTTTTAAAATTATAATTGCTCATCAAAGTCCTTTTGTTTTACTGTATTAA
ATTCTACATGATTTCATGGTTCTCTAAATCCATCCTGCACTTTCATGTTT
ATGCCTTCTGTGAGGAAGGTCCACGCCTCTGACGTCCCAACTCAGAATTA
CAATTCTCCTCACTCTCAGGGGCTCCACTCAGGGGAAGTCCCCATTAACT
GGCTCTGCTCCACTTCACATTATAAGAAAGTGCACTCATGTTACAAATTC
CTTATTTAGCCTGACACACACTTGTACATCTTTCTCATCATAGTACCTAT
GACACAGTGTCCTATGCGAAAGCAGCAATGAAGAAACTAATTGTGTATAC
ATAATTATGTATGCAATGTAATTGCATATGCAAATCAGCACATAAGTATA
TAAAGCACACTTGCCACACTCTAATGAGGTTAAATGATTAAAGTTTGCAC
ATGCAATCAAGACATTGAAAACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_m21.b1 MSMg01no063_m21.b1 CHROMAT_FILE:
MSMg01no063_m21.b1 PHD_FILE: MSMg01no063_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:19 2005
         (319 letters)



>mm_chr6_17534187_17534905
          Length = 719

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagatttttccagatcagtcactgcatctttctacgccttattctccaaactgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagatttttccagatcagtcactgcatctttctacgccttattctccaaactgg 263

                                                                       
Query: 64  aaaccctcattttcaatttttttattgttatctgtaatctgctttgtagtccaagaagat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaccctcattttcaatttttttattgttatctgtaatctgctttgtagtccaagaagat 323

                                                                       
Query: 124 tcaagacagaaggccctagcataaaattacctgcaattaataaatataataataactata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaagacagaaggccctagcataaaattacctgcaattaataaatataataataactata 383

                                                                       
Query: 184 atgacaatacataataatcaatataattataacaaaataaaggggacaaaaggtgaatac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgacaatacataataatcaatataattataacaaaataaaggggacaaaaggtgaatac 443

                                                                       
Query: 244 aatcaaaatacattatgctcatgtataaaagtgttacaataaaatgtgtatgattgggtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatcaaaatacattatgctcatgtataaaagtgttacaataaaatgtgtatgattgggtt 503

                         
Query: 304 atgccaataaaaac 317
           ||||||||||||||
Sbjct: 504 atgccaataaaaac 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no063_m21.g1 MSMg01no063_m21.g1 CHROMAT_FILE:
MSMg01no063_m21.g1 PHD_FILE: MSMg01no063_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:19 2005
         (286 letters)



>mm_chr6_17651314_17651999
          Length = 686

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   aactgtacccagaactttagtgccatgaggagccagctaggatggagaaagttaagaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aactgtacccagaactttagtgccatgaggagccagctaggatggagaaagttaagaata 427

                                                                       
Query: 65  ataaaaagaaactgggctgtgccttgaaaggaatcttataattatttctatgtggaaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ataaaaagaaactgggctgtgccttgaaaggaatcttataattatttctatgtggaaagc 367

                                                                       
Query: 125 taccaatgaaacaagaggatctcttttaaaattataattgctcatcaaagtccttttgtt 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 366 taccaatgaaacaagaggatctgttttaaaattataattgctcatcaaagtccttttgtt 307

                                                                       
Query: 185 ttactgtattaaattctacatgatttcatggttctctaaatccatcctgcactttcatgt 244
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 306 ttattgtattaaattctacatgatttcatggttctttaaatccatcctgcactttcatgt 247

                                                     
Query: 245 ttatgccttctgtgaggaaggtccacgcctctgacgtcccaa 286
           ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttatgtcttctgtgaggaaggtccacgcctctgacgtcccaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)