BAC Information

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BAC

Clone NameMSMg01-065B05
Chromosome6 (Build37)
Map Location 113,146,857 - 113,147,174
singlet/doubletsinglet
Overlap genenone
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4
Downstream geneMtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065B05.T7 (MSMg01no065_b05.b1)MSMg01-065B05.TJ (MSMg01no065_b05.g1)
ACCAG290371AG290372
length7501,193
length of high quality
(start - end)
320 (106 - 425)---
definitionCHROMAT_FILE: MSMg01no065_b05.b1 PHD_FILE: MSMg01no065_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:29 2005CHROMAT_FILE: MSMg01no065_b05.g1 PHD_FILE: MSMg01no065_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNTTTTTTTNNNNTTTTTTNNTTTTTTTTNTNNNTTNNNNTTTT
TATCCCATTCTATCTAAATTTGCGGCGCTATACGACTCCTATTACAAGAG
AAGCGCGGAATTCACCATCTTCACGAACGGAGTACTGGCATGAACTTGGC
TTCTCTTTCCACTCTCTTTAAAGGAGCCTTCCTTTCCACCTGCCAAGGAT
CCTGTGGTCCTGGAAGCATGAGCGGAAGGGATGGGGCAAGCAATCTCCTC
CAATACCTCTTCCCATTTTGCAGATGGGGATAGAAGCCAAGGAAGACATG
CCATGGAAGAAGACAACTGCCCTGTCAACCTGTCACAAACCATCTCGCCC
ATCTAATAAGCAGGGATGAGCCCCCTGAATGGTGGCACTCCAATGCGGCG
TACTGGAGTCAAGAGGACTCGGGAGACGGAAGATGTAAGAAGACAGAGGG
GTCCTGCTGCACATGCTTCCAGCTCGCCTGACTTCCAAGCAATCTCCTGC
CCTGTTCCCCGCTTTGTCTTAAATTAATCTTTTCCTAACCTGCTGAGCCA
CGCTGAGCCATCCAGAAGAAAAGGACATCATATATTCACTGCCGAGTTCC
CGTAAGGCTAGCCTCTTGGTCTCCCTCTCAAGAGCATAGGCTCCCAGTGA
AGTTCTAGCCCACACAGTTTTGACAATAGCGAATTTGTTCCCATTGGATC
CTTTCTCACCCAAGTTCTCGGAATAGATTCTGGTTATAGGACCAGTATAT

TTTTTTTTATATTTTTANAAAAAAANAAATANTTATATAAANAAATATAA
AGAATAATAAATATATATNNTTTATTTATTTTATTGATGATAGTGGAGGC
TTGAATGTTAGATCACGCCTGCTTCTCCCGATACTTTATCGTTGACACCA
NCAGAATGTGTACCCGTTGCGATGATCACCCTCGGTTGCGATGCCAGGCT
AAGCGGAAGGTCCTGGGACCACTGTTTCATCCGCATTCGGACACAACGCA
GAGGACACACGAACGACCACGTGTCCACTTATCTACTGCATCTTCGCTGT
ATCTCTCGATCCTCCTATTTCGTAGCGTGTCAAAGTCACTACTCTCACAG
CGTCACTCTGACTATAGTAATCAGTCTAGAACAAGTATCATTACATTAAT
GCGTACGTAATCAGGCGTACTGCGTGGAATGGCGTACGGGCCCAAATCGG
TCCTGACCACGACCCGAACTCTAACAATCATCGCTAAGTTAAACTTCGTC
CCTCGATACTCACCCCAGCACCTGCCATTTACGCAATCCTTACCGACCGG
TCTGTGCAGCTCGACACGTGTGCATATTGTCTGCGCGTATTTGCGAGACG
ACGTAGTGCACCGTCATGGCTTCCCCTCTTTGTTGTCATACGTCTTGCGC
GCGGCTACGCTAGATTCCGCGCCAACCGAGAATGCGCACAATCTATTTAT
ATTGCACTGAAGATATCGTCCTCTACGATACGATATTGTCACACCACAGC
GTGCAACTTGACTGTCCTTACACAAATCATTTAACACTGATCCTTGTGTC
GCGCATGCGCATATATTGCCACACTTCGAGTTCCTATATCGTTATGATTA
TAGTTATTATCTATCGCGTATCGTATCCTCGCCCAGATGTCGCAGGCGTT
ATCGCGCGATTAAGTCTCTAGTATTACGCCAGTTACGCGCATAACACGCG
ACATCATGACCACTGACGTGAATACGATTATAACTACTCCCGACTCCGTC
CCGAGCTATACACATATACACCAGTACACTAATTTCAGATAGATGCTATG
ACTGATGCCACACTACTCCNTATAACTTGACAATGTACCTCACTCATTTT
TCCGTCTCTGATTGGAACGTGATGATATCGACCGTTCATGCTGCTNGCGT
CGCTGATGCTCGTCTCGACGCAATAGTCTCCGATGTGAATGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_b05.b1 MSMg01no065_b05.b1 CHROMAT_FILE:
MSMg01no065_b05.b1 PHD_FILE: MSMg01no065_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:29 2005
         (320 letters)



>mm_chr6_113146655_113147374
          Length = 720

 Score =  561 bits (290), Expect = e-164
 Identities = 311/318 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcaccatcttcacgaacggagtactggcatgaacttggcttctctttccactctct 62
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaccatccccaggaacggagtactggcatgaacttggcttctctttccactctct 262

                                                                       
Query: 63  ttaaaggagccttcctttccacctgccaaggatcctgtggtcctggaagcatgagcggaa 122
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 263 ttgaaggagccttcctttccacctgccaaggatcctgtggtcctggaagcatgagcagaa 322

                                                                       
Query: 123 gggatggggcaagcaatctcctccaatacctcttcccattttgcagatggggatagaagc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gggatggggcaagcaatctcctccaatacctcttcccattttgcagatggggatagaagc 382

                                                                       
Query: 183 caaggaagacatgccatggaagaagacaactgccctgtcaacctgtcacaaaccatctcg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaggaagacatgccatggaagaagacaactgccctgtcaacctgtcacaaaccatctcg 442

                                                                       
Query: 243 cccatctaataagcagggatgagccccctgaatggtggcactccaatgcggcgtactgga 302
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 443 cccatctaataagcagggatgagccccctgaagggtggcactccaatgcggggtactgga 502

                             
Query: 303 gtcaagaggactcgggag 320
           ||||||||||||||||||
Sbjct: 503 gtcaagaggactcgggag 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)