BAC Information

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BAC

Clone NameMSMg01-065L15
Chromosome6 (Build37)
Map Location 64,687,601 - 64,688,034
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid2, Atoh1
Downstream geneLOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065L15.T7 (MSMg01no065_l15.b1)MSMg01-065L15.TJ (MSMg01no065_l15.g1)
ACCAG290867AG290868
length672669
length of high quality
(start - end)
527 (31 - 557)437 (55 - 491)
definitionCHROMAT_FILE: MSMg01no065_l15.b1 PHD_FILE: MSMg01no065_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:19 2005CHROMAT_FILE: MSMg01no065_l15.g1 PHD_FILE: MSMg01no065_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGTAATACACTCCTATATCCAGAAATCCGCGGAATTCTTGGTTTA
GTTCTATACCCATTTTTTAAATTGGGTTGTTTGGCCTTTTGATGGTTAGC
TTCTTGAGATTTTTTTTTTGACTAAATTTTTTATTAGATATTTTCTTTAT
TTACATTTCAAATGTTATCCCCTTTCTTAGTTTCCCCTCTGAAAGCCCCC
TATCTCTTCCCCCTCCCCCTGCTCACTCACTCACTCCGTCTTCCTGGCCC
TGGCAGTTCCCTATACTGGGGCATATTACCTTCATAGGACCAAGAGCCTC
TCCTCCCATTGATGACTGATGAGGCCATCCTTTGCTACATGTGCAGCTAG
AGCCATGGGTCCTTCCATGTGTTTTCTTTGGTTGGTGGTTTAGTCCCAGG
GAGCTCTGGAGATACTCGTTAGTTCATATTGTTGTTCCTCCTATGGGGCT
GCAAACACCTTCAGCAACTTGGGTATTTTCTCTAGCTCCTTCATTGGGGA
CCCAGTATCCATCCAGTGGATAGCTATGGACATCCACTTCTGTATTTGCC
AGGCACTGGCATAGCCTCTAAGGAGACAGCTATATCAGGCTCCTGTTAAC
AAGCATTTGTTGGGATCCACAATAATGTCTGGTTTTGGCAATTGTTTATG
GGATGGATCCCCAAGGTGGGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACACCAAAACTGGTTTTCCAATACCAAGTGGCCAGTCATAAACACA
TGTAACATACAAGCAACATTAAATGGACTCAGCAGGTTGTATTTATATGC
TTATTCATTTATATATGTATATAAGAGTAATGACTTAAAGAAAAAGAGAT
CATAAATCTGAAAGGGAGGGAAAAATAGGAAGGGTTAGAGGAAGGAGAAA
GAGAAATGTAAGAACAGTATATATACACACAAAATTTTAAAATAAATTTA
AGTTATGGAAAAGAACATGATGAGATATAATATGATGAAGGTAATGGCCC
CAAGGCATATCATTTCCAAAACTGTTGTCCATCTACACATGGGAGGGATA
ACAAGAAAAATGGGGCTGAAGAAGAATGAAGACTGAAGTGTGGACACTAT
GCCCCTCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGA
CCAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGACTGCCATAT
CCAGGGATCCACCCCATAATCAGCTTCCAAACGCTGACTCCATTGCTTAC
ACTAGCAAGATTTTTATCGAAAGGACCAAGATGTAGCTGCCTCTTGTGAG
ACTATGCCGAGGCCCAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_l15.g1 MSMg01no065_l15.g1 CHROMAT_FILE:
MSMg01no065_l15.g1 PHD_FILE: MSMg01no065_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:19 2005
         (437 letters)



>mm_chr6_64687398_64688234
          Length = 837

 Score =  816 bits (422), Expect = 0.0
 Identities = 431/434 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ccaaaactggttttccaataccaagtggccagtcataaacacatgtaacatacaagcaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ccaaaactggttttccaataccaagtggccagtcataaacacatgtaacatacaagcaac 263

                                                                       
Query: 64  attaaatggactcagcaggttgtatttatatgcttattcatttatatatgtatataagag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attaaatggactcagcaggttgtatttatatgcttattcatttatatatgtatataagag 323

                                                                       
Query: 124 taatgacttaaagaaaaagagatcataaatctgaaagggagggaaaaataggaagggtta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taatgacttaaagaaaaagagatcataaatctgaaagggagggaaaaataggaagggtta 383

                                                                       
Query: 184 gaggaaggagaaagagaaatgtaagaacagtatatatacacacaaaattttaaaataaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaggaaggagaaagagaaatgtaagaacagtatatatacacacaaaattttaaaataaat 443

                                                                       
Query: 244 ttaagttatggaaaagaacatgatgagatataatatgatgaaggtaatggccccaaggca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaagttatggaaaagaacatgatgagatataatatgatgaaggtaatggccccaaggca 503

                                                                       
Query: 304 tatcatttccaaaactgttgtccatctacacatgggagggataacaagaaaaatggggct 363
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 504 tatcatttccaaaactgttgtccatctacacatgggagggataataagaaaaacggggct 563

                                                                       
Query: 364 gaagaagaatgaagactgaagtgtggacactatgcccctccttagaattgggaacaaaac 423
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaaaaagaatgaagactgaagtgtggacactatgcccctccttagaattgggaacaaaac 623

                         
Query: 424 acccatggaaggag 437
           ||||||||||||||
Sbjct: 624 acccatggaaggag 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)