BAC Information

Click to search

BAC

Clone NameMSMg01-066B05
Chromosome6 (Build37)
Map Location 146,967,480 - 146,967,784
singlet/doubletsinglet
Overlap genePpfibp1
Upstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, 1700034J05Rik
Downstream gene2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066B05.T7 (MSMg01no066_b05.b1)MSMg01-066B05.TJ (MSMg01no066_b05.g1)
ACCAG291135AG291136
length703715
length of high quality
(start - end)
618 (74 - 691)310 (66 - 375)
definitionCHROMAT_FILE: MSMg01no066_b05.b1 PHD_FILE: MSMg01no066_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:45 2005CHROMAT_FILE: MSMg01no066_b05.g1 PHD_FILE: MSMg01no066_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGC
GGAATTCAAGGCCCATATCCAACCATCTACAAGCAAACCAGTAGCCAACA
TCAAAGTAAATGGTGAGAAGCTTGAAGCAAAACCACTAAAATCAGGGACT
AGACAAGGCTGTCCACTTTCTCCCTACCTATTCAACATAGTACTTGAAGT
CCTAGCCAGAGCAATTCAACAACAAAAGGAGATCAAGGGGATACAAATTG
GAAAAGATGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATAT
ATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAATAG
CTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATTGCCT
TTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGAGAAACAACA
CCCTTCTCAATAGTCACAAATAACATAAAATATCTTGGTGTGACTCTAAC
TAAGGAAGTGAAAGATCTATATGATAAAAACTTCAAATCTCTGAAGAAAG
AAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATT
GGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAG
ATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAG
AAA
CTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCCAATTCTTAAGTTGCTAAAAGCAAGAAGGTT
TATATATTATTTGTACTCACGTGGTCTTATTCTATCCTTGGGACAGCTGA
GACAGAAAAAGAGACAGCTGAGCACCTGAATTTGGCTGGTACATCTCGGT
CAAAAGGTTCCCAGGGAACCAGTCCATTCCCAATGTCTCCACCATCTCCA
GATTCCAGAAAGAAATCCAGAGGCATCATGAGACTCTTTGGGAAGTAAGT
GGAAGGAAGGGCAGGTGGAGGACCTGACTTGTGTGCTGTTCAGGTGCAGA
GGACAATGGGAAGTTTGCCTGGGCGTGGTACCCAAATCCCAAGCCTTTTT
GGAAGAAAGACTGATAATGGGATGCATATACTCATTGGGCCCTGGGTAAA
ATTTAATTTCAATACTTGGGCTACTGCCTTTCAAAACCCACCAACCAAAA
CCTTATGATTAACCCCCCAGTTCTAAAGCCTCCTCCGGCTAAAGGTATGA
CCTCGGTGCGGGTGGGCCCTTTTATTTATAAGAAATTCGGTAAATACCCT
CCACCCTAGATGATAATTGTCGGACTCTGAATTTATAATATGGAGTGAAA
AGGTCCCCCCGTCTGATCCCTGCCCTGTTTTGTTTTCCACAATCTTAGTA
TTTCTCCTTCCCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_b05.g1 MSMg01no066_b05.g1 CHROMAT_FILE:
MSMg01no066_b05.g1 PHD_FILE: MSMg01no066_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:45 2005
         (310 letters)



>mm_chr6_146967275_146967984
          Length = 710

 Score =  590 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcttaagttgctaaaagcaagaaggtttatatattatttgtactcacgtggtcttat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcttaagttgctaaaagcaagaaggtttatatattatttgtactcacgtggtcttat 265

                                                                       
Query: 66  tctatccttgggacagctgagacagaaaaagagacagctgagcacctgaatttggctggt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tctatccttgggacagctgagacagaaaaagagacagctgagcacctgaatttggctggt 325

                                                                       
Query: 126 acatctcggtcaaaaggttcccagggaaccagtccattcccaatgtctccaccatctcca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acatctcggtcaaaaggttcccagggaaccagtccattcccaatgtctccaccatctcca 385

                                                                       
Query: 186 gattccagaaagaaatccagaggcatcatgagactctttgggaagtaagtggaaggaagg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gattccagaaagaaatccagaggcatcatgagactctttgggaagtaagtggaaggaagg 445

                                                                       
Query: 246 gcaggtggaggacctgacttgtgtgctgttcaggtgcagaggacaatgggaagtttgcct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcaggtggaggacctgacttgtgtgctgttcaggtgcagaggacaatgggaagtttgcct 505

                
Query: 306 gggcg 310
           |||||
Sbjct: 506 gggcg 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)