BAC Information

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BAC

Clone NameMSMg01-066F14
Chromosome6 (Build37)
Map Location 62,265,629 - 62,423,157
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneLOC100042694
Downstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066F14.T7 (MSMg01no066_f14.b1)MSMg01-066F14.TJ (MSMg01no066_f14.g1)
ACCAG291342AG291343
length674665
length of high quality
(start - end)
428 (59 - 486)246 (45 - 290)
definitionCHROMAT_FILE: MSMg01no066_f14.b1 PHD_FILE: MSMg01no066_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:07 2005CHROMAT_FILE: MSMg01no066_f14.g1 PHD_FILE: MSMg01no066_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,265,629 - 62,266,056)(62,422,912 - 62,423,157)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCCCAACTCTTCCACAAGACTTCCCCAAAAACTGAATGAAGT
TTCTTAGGAGAAAGTGAGTTTAGATTCCTTTATGGTATTTCCTTGAGCAG
AGGGCCTGATGTAGGGCAGTGGAGCTGTGGGCAGACAAAGGAGGTCAGGA
ACAATAGGAACTTAGTTCAGACACTCTCTTTAAGTAACATTATTTAATAA
AGTACCAGGTAATAAATAAATAAATATTTTAGAATTTACATTTCCCTATG
TTTTTATGCTTGCTTTTATAGATCACTTGTTCATGTCCATGTTCTTTCCT
ACTTTTTGCATTTTAAATTACTATAAAACTTTTATGTCACATACATTAGT
GTTAATAAGAAGTGGATACTGATTGTATATGTTCAAATATAGGATTTTTG
AAGTAATGTTCCTTTTTTAAACTCTCATAACTTACAAATTACAATAGTTA
ATTTATAACTATTATGGTTCTTAGAAGCAAATTTGTATCTTTTGTGAATC
TGATCTGGATTTTACTTATTTATAACTTCGCATTCCCTCGAATATATATT
TAGTAAGTTAACGCCTTTATGTAACTATGATACTCTTATGAATTCATACC
CCTTGTATTAACCCATCTACCCAC
GAGTGTGCAGAAGATGCGCGGAATTCCAGGTTTTTTCCTACTACATATAA
AGAATTCATATGAATAAAAGTATACAGATTAGAAATTTTATACAACGTAT
TGTGACAATGTATGTCAAGGAGAAAAACCATCCAATTCATCAAGACACAC
TTTGGTTTGGTTTGGATCCTGTTTCTTTAAGAAAAGAACAAAATTATTAA
TTTTATTTTACAAGTGAATATTTTACCTGAATATTTATACAAACTATGTA
TGTGGTTGGGCCCCATAGAGGTAAGCTGAGGACATTGGATCNATCGTTAC
TGTAGTTACAGATGATTGGGAATCATCTTATGGTGTTGGACATTGAACCC
GAGTCCTCCCCAAAGACAATATATTTTCTTTATGGCTAAACTTTCTCAAC
AGCAGGAATCCCATGTTTCCTTTACTACTTGTATAAACAGGTAAGTTGTT
CATTTTTAAAAACTATGATAGACATAATACTCTCCAACAAAACAACTGGA
TTATGGTAACCTATCCCATATAACCCAGTCTTTTAAAGTTACTCAGAGTA
TGTACTGAAAGAAATATACAATAGGCCACAAAACTACTCGAAATACAGTT
AATTATGTGCGTTTCTGTGTGCATGCGCTAGTGCCTGCAATGCTGACAAG
AAGGTATTAGCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_f14.b1 MSMg01no066_f14.b1 CHROMAT_FILE:
MSMg01no066_f14.b1 PHD_FILE: MSMg01no066_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:07 2005
         (428 letters)



>mm_chr6_62265429_62266256
          Length = 828

 Score =  743 bits (384), Expect = 0.0
 Identities = 417/428 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccaactcttccacaagacttccccaaaaactgaatgaagtttcttaggagaaagtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccaactcttccacaagacttccccaaaaactgaatgaagtttcttaggagaaagtgag 260

                                                                       
Query: 61  tttagattcctttatggtatttccttgagcagagggcctgatgtagggcagtggagctgt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gttagattcctttatggtatttccttgagcagagggcctgatgtagggcagtggacctgt 320

                                                                       
Query: 121 gggcagacaaaggaggtcaggaacaataggaacttagttcagacactctctttaagtaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcagacaaaggaggtcaggaacaataggaacttagttcagacactctctttaagtaac 380

                                                                       
Query: 181 attatttaataaagtaccaggtaataaataaataaatattttagaatttacatttcccta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 attatttaataaagtaccaggtaataaataaataaatattttagaatttatatttcccta 440

                                                                       
Query: 241 tgtttttatgcttgcttttatagatcacttgttcatgtccatgttctttcctactttttg 300
           |||   |||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 441 tgtagatatgcttgcttttatagatcacttgttcatgtccatcttctttcctaatttttg 500

                                                                       
Query: 301 cattttaaattactataaaacttttatgtcacatacattagtgttaataagaagtggata 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 cattttaaattactataaaacttttatgtcacatacattagttttaataagaagtggata 560

                                                                       
Query: 361 ctgattgtatatgttcaaatataggatttttgaagtaatgttccttttttaaactctcat 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 ctgattgtatatgttcaaataaaggatttttgaagtaatgttccttttttaaactctcaa 620

                   
Query: 421 aacttaca 428
           ||||||||
Sbjct: 621 aacttaca 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no066_f14.g1 MSMg01no066_f14.g1 CHROMAT_FILE:
MSMg01no066_f14.g1 PHD_FILE: MSMg01no066_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:07 2005
         (246 letters)



>mm_chr6_62422814_62423459
          Length = 646

 Score =  429 bits (222), Expect = e-125
 Identities = 240/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataaagaattcatatgaataaaagtatacagattagaaattttatacaacgtattgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 344 atataaagaattcatatgaataaaagtatacagattagaaattttatacaatgtattgtg 285

                                                                       
Query: 61  acaatgtatgtcaaggagaaaaaccatccaattcatcaagacacactttggtttggtttg 120
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 284 acaatctatgtcaaggagaaaaaccatccaattcatcaagacacactttggtttagtttg 225

                                                                       
Query: 121 gatcctgtttctttaagaaaagaacaaaattattaattttattttacaagtgaatatttt 180
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 224 gatcctgtttctttaagaaaagaataaaattattaattttattttacacgtgaatatttt 165

                                                                       
Query: 181 acctgaatatttatacaaactatgtatgtggttgggccccatagaggtaagctgaggaca 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 164 acctgaatatttatacaaactatgtatgtggttgggccccataaaggtaagctgaggaca 105

                 
Query: 241 ttggat 246
           ||||||
Sbjct: 104 ttggat 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)