Query= MSMg01no067_k12.b1 MSMg01no067_k12.b1 CHROMAT_FILE:
MSMg01no067_k12.b1 PHD_FILE: MSMg01no067_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:49 2005
(573 letters)
>mm_chr6_110892822_110893795
Length = 974
Score = 949 bits (491), Expect = 0.0
Identities = 551/571 (96%), Gaps = 7/571 (1%)
Strand = Plus / Minus
Query: 7 ggaattcatttctttag-tcacatttgttcttgttgtttgcttgttttatcttttgattt 65
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggaattcatttctttagaccacatttgttcttgttgtttgcttgttttatcttttgattt 582
Query: 66 aatactcctcctgtttatcacatataaatgttatatcaaatacagatagaggaagaaaat 125
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aatactcctcctgtttgtcacatataaatgttatatcaaatacagatagaggaagaaaat 522
Query: 126 gattttcagattacagtgattaataaatgtgatacaattgtaaaatttattccttgaagg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gattttcagattacagtgattaataaatgtgatacaattgtaaaatttattccttgaagg 462
Query: 186 ctttacctatttttttctttctgatgaagattgctatcctgcattc-caatctagtattt 244
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 461 ctttaccaatttttttctttctgatgaagattgctatcctgcattctcaatctagtattt 402
Query: 245 attagatttctaggaatgaaacttcctaggatcagataaaattctactggtcttctccat 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 attaga-ttctaggaatgaaacttcctaggatcagataaaattctactggtcttctccat 343
Query: 305 gcataaatatgaagaggaactgtaagctgaagtttacataaaaacagt-atcacctgtat 363
|||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| |||
Sbjct: 342 gcataaatatgaagaggaactgtaagttgaagtttacataaaaacagtca-cacctatat 284
Query: 364 tcaaaatttggcataattaaatcatgttagactttcatagttgtaaagagttgggatgtt 423
|||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 283 tcaaaatttgacataattaaaccatgttagactctcatagttgtaaagagttgggatgtt 224
Query: 424 gttggaatagagaattattagccatttattgcccatccctgtgtttaccatgagatcctt 483
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gttggaatagagaattagtagccatttattgcccatccctgtgtttaccatgagatcctt 164
Query: 484 ttgactatcatgtatatcatttaaaaatgtattaatgtaataaaccactagcctctacaa 543
||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| ||
Sbjct: 163 ttgactatcatgtatatcatttagaaatttattaatgtaatcaaccactagcctctagaa 104
Query: 544 atcttcaaactatgaataata-taaaattgc 573
|||||||||||||||||| || |||||||||
Sbjct: 103 atcttcaaactatgaata-taataaaattgc 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space: 542732
Effective search space used: 542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_k12.g1 MSMg01no067_k12.g1 CHROMAT_FILE:
MSMg01no067_k12.g1 PHD_FILE: MSMg01no067_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:49 2005
(318 letters)
>mm_chr6_110876908_110877624
Length = 717
Score = 574 bits (297), Expect = e-168
Identities = 312/317 (98%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 1 ttttaatttcaaaagcagttacaagaacataaatagatcatatatatggaaatattcaca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaatttcaaaagcagttagaagaacataaatagatcatatatatggaaatattcaca 260
Query: 61 acatgctaatgagaaaggaaaaatcccaccctgctttacaggtaattcactgaggaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgctaatgagaaaggaaaaatcccaccctgctttacaggtaattcactgaggaagaa 320
Query: 121 tgttccagcaaaggccctctcagtggctctgcaattaaatgcaaggttttgcctaaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttccagcaaaggccctctcagtggctctgcaattaaatgcaaggttttgcctaaagtg 380
Query: 181 tctgaaatatataagcacttaggagaaagagtgggatccataaacagaaggaaaaatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tctgaaatatataagcacttaggagaaagagtgggatccataaacagaaggaaaa-tgat 439
Query: 241 gaaaaaatgaaacaggtttgtctttatttattaaagtttggaaaatgtggggctgaaagg 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 gaaaaaatgaaacaggtttgtctccatttattaaagtttggaaaatgtggggctgaaagg 499
Query: 301 caggagaatttctcacc 317
|||||||| ||||||||
Sbjct: 500 caggagaacttctcacc 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space: 218772
Effective search space used: 218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
