BAC Information

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BAC

Clone NameMSMg01-067L10
Chromosome6 (Build37)
Map Location 109,799,867 - 109,800,009
singlet/doubletsinglet
Overlap genenone
Upstream geneEdem1, EG627371, LOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067L10.T7 (MSMg01no067_l10.b1)MSMg01-067L10.TJ (MSMg01no067_l10.g1)
ACCAG292382AG292383
length714726
length of high quality
(start - end)
146 (35 - 180)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no067_l10.b1 PHD_FILE: MSMg01no067_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:53 2005CHROMAT_FILE: MSMg01no067_l10.g1 PHD_FILE: MSMg01no067_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCAG
GAATTGATTGTAGAACTTGGGTCGCTAATAGAGTATCTGACAGACATGAG
GTGTTCTCTGAACACTTGTCTACAGAAAGGATAAAGGGATAACTTCCTTT
CAGGACAGAGACTACACTAATCAGACATCTCATATAATAACAGAGATTCT
CTGACTGAGGTAAGCAATTTCATACTAATCCTGAGACTAGCACATAAAGA
GTTCGGAGGACAAAGGAGGATTGGACAACTAATATTCAGCACGGATGGCT
TTGAAGGATTGTTATTGTCCACTTTATGTGTCAGGGGTCTTGAGAAGATT
TTTTTTTTGTTATACCCCCCCCCCCCCTTTAAAGAGACCAAGGTTTAATG
GCACATTCTTCCTTTTTTAATTAAAAATATAACGTTGTTGGGGGGTTCCC
ATCCTGATCCAAGTAGCTCATTCTTTTCCTCTAGTCTTCCTAGCCTCCCC
CTCAGCGATTTGAGACTTCCTTTCCCTTGTTCACATAACGAGTCGAAAAC
TATTTCTTTTATTCGTTTTTTAGATTTTCTCATTAGACTCGCCTATTTTA
ATTCCCTACTCTTTCTTCATTACTTCCACTTTTTGTTTCCACCCAACCAC
TTTCCCCTTATTCATTCATATATTTTTTCCCCTCTCTTTCTCTCCTCCCT
CTTTTTCCTTTATT
ATCGATGATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGTCCCTTACTCCA
TAAAAACCCCTAGATTTTGAGCCTCGTGGTCGACATCCTTTATCTTCTGT
GTGGGATGCATGTCGGTCCAGAGCTCCGTAATTAAATGACCTCATGTAAT
TACATAGAGATGGTCCTTCGTGATTTTTTGGGTGCACGCCGAATCGGGAA
TTGAGTGGGGGTTTCCCCACTAGGTTCTAACAGAGAAAGCATATTACTGC
GAGTTTGAATCTATGTCTTATTAACTATTTTCTCCTCAAAGAAAGGGGAT
AACATTTTTATTTTATTTCCCCCCCCCCCCCTACTATTATTATGGTTAAA
ATTATTCACACGTTATCTCTGCACAAAAAATAAGAAAAATAAGAGGGGGG
GGGCGAGTTCTACTGATCTAGTCTATGTCTCTTGTGTCCTGCTTGTTCAC
CTGTCTACAATGTCTCCCCTACTATGAATGACTATTATTTTCACCCTCTT
AATTCTGTTTTTTCATCTCATTACTTGTTTCCTATTTTGCTTCCATTATC
CATTCTATTGTATTAATAATTGTGATATTAATTAATATTTTTTTATTTTG
CAATCATTATATCCTCACTTTTTTTGTTTATTTGTAATTATGGTCATCTG
AACTGTTTATATTTTTCCTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_l10.b1 MSMg01no067_l10.b1 CHROMAT_FILE:
MSMg01no067_l10.b1 PHD_FILE: MSMg01no067_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:53 2005
         (146 letters)



>mm_chr6_109799664_109800209
          Length = 546

 Score =  246 bits (127), Expect = 6e-70
 Identities = 139/143 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtcaggaattgattgtagaacttgggtcgctaatagagtatctgacagacat 63
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 346 ggaattcagtcaggaattgattgtagaacttgggtagctaatagagtatctgacagacat 287

                                                                       
Query: 64  gaggtgttctctgaacacttgtctacagaaaggataaagggataacttcctttcaggaca 123
           ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaggtattctctgaatatttgtctacagaaaggataaagggataacttcctttcaggaca 227

                                  
Query: 124 gagactacactaatcagacatct 146
           |||||||||||||||||||||||
Sbjct: 226 gagactacactaatcagacatct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)