Query= MSMg01no067_n15.b1 MSMg01no067_n15.b1 CHROMAT_FILE:
MSMg01no067_n15.b1 PHD_FILE: MSMg01no067_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:04 2005
(295 letters)
>mm_chr6_19772566_19773256
Length = 691
Score = 493 bits (255), Expect = e-144
Identities = 282/293 (96%), Gaps = 6/293 (2%)
Strand = Plus / Plus
Query: 1 tataagtcatattagagaacaattagaaatcaggtcttaaaaccatttccca-tttctgc 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 201 tataagtcatattagagaacaattagaaatcaggtcttaaaaccatttcccacttt-tgc 259
Query: 60 tttactaatttattttacagtatagaggtttgaattaaagactttcatatacttgataaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttactaatttattttacagtatagaggtttgaattaaagactttcatatacttgataaa 319
Query: 120 tgctctactactgacctgtatttccatacctgtttgtactgttttattttgagacagttt 179
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 tgctctactactgacctgtaattccatacctgtttgtactgttttattttgaaacagttt 379
Query: 180 tgttattcatttatttgttcatttgttttcagttaccctagctgtccaggaagccagtat 239
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtttttcattt----gttcatttgttttcagttaccctagctgtccaggaagccagtat 435
Query: 240 acacccctaggaatattctgaagggtttttctcctcatttcttccttctccat 292
| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atacccctaggaatgttctgaagggtttttctcctcatttcttccttctccat 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 691
Length adjustment: 9
Effective length of query: 286
Effective length of database: 682
Effective search space: 195052
Effective search space used: 195052
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no067_n15.g1 MSMg01no067_n15.g1 CHROMAT_FILE:
MSMg01no067_n15.g1 PHD_FILE: MSMg01no067_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:05 2005
(287 letters)
>mm_chr6_19898664_19899350
Length = 687
Score = 509 bits (263), Expect = e-148
Identities = 281/287 (97%)
Strand = Plus / Minus
Query: 1 aatagcatgaagtaataatttcatttaaaaaaataggcaaggctttaaattgatattgct 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 615 aatagcatgaagtaataatttcatttaaaaaaataggcaaggccttaaattgatattgct 556
Query: 61 ccagcaaaggcattcaaatggcaaacatgcatacggatactagttaacatcagtcataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccagcaaaggcattcaaatggcaaacatgcatacggatactagttaacatcagtcataat 496
Query: 121 catagaaagaaaaaatatagtcatgtattccacttgataatcgtcagagaaaatattaac 180
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 495 catagaaagaaaaattatagtcatgtattccacttgataatcgacagagaaaatattaac 436
Query: 181 tatggataaaacataacaggacgagagaaaacatgggaaaatggcagaaccatttttgac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tatggataaaacataacaggacgagagaaaacatgggaaaatggcagaaccatttttgaa 376
Query: 241 gctgataactattaggcattctccaggttcacaatgaagttaaatgt 287
||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 375 gctgagaactagtaggcattctccaggttcacaatgaagttaaatgt 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
