BAC Information

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BAC

Clone NameMSMg01-068F09
Chromosome6 (Build37)
Map Location 102,514,547 - 102,514,884
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666084, Cntn3, EG666123
Downstream geneChl1, LOC666141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068F09.T7 (MSMg01no068_f09.b1)MSMg01-068F09.TJ (MSMg01no068_f09.g1)
ACCAG292854AG292855
length697703
length of high quality
(start - end)
342 (64 - 405)535 (76 - 610)
definitionCHROMAT_FILE: MSMg01no068_f09.b1 PHD_FILE: MSMg01no068_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:44 2005CHROMAT_FILE: MSMg01no068_f09.g1 PHD_FILE: MSMg01no068_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
GTAAACTCACAGTCACTATCTGGAGTGTCTGTCTGTGACTCCTTCCTTCC
TCCCATCAATTTATCCATCCATTATCTATCTATTGCGTACCCTTAATAAT
TATATTTTAATGATAAAAGTGGCGATTTTGCGAGATTATGTTAGCTCAGC
TGCAAGAGACCTGGAATCTATGTCCTTAAAAACCGGTGCTACCTAGATGC
CAGCTGTGAGGCAGGAGGCCACCCAGCGGTGACTTGCTGACCGCCAACCA
TCCAGCTCTTCCTGGTCCCTTCTGTGGCTGGACAGACGTAAGCTGGCTCT
AGCAGCTCAGGGCTCAGGCAGGGACCGGTGGCAGCGGGGCGCGGAGGCGC
ATCGGGAGGGTGGTGGTGCGAGCAGCGTGAGGCGCAGGATCCTGTTGGCT
GCGCCGCCGCGCTCTCCGCCCCTTTCTCCCACCCTCTGACCCCTTCCTTT
CCTCCCTCCCTTCAGTGCTCGTGCGTTAGCCAGGAGCCCTCGCCTGACTG
GCTTATGTGCATGTTGCGCACCTTTCTGCGCCTGCAACATTCTTTTCTAC
TCTGACGCGTTGTGTTGCCGTCCTCTGATGATTTGTACCCCGTGCTTTTC
CACTGCTAATCGTGCGTGATCTTCGTAACTTCTTCGTATGGGATCTC
NNTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTACAGAGGTAAGGCAGGAGTGGGTG
ACCAGGTGGGGGAGCACCCTTTTAGAGGCAAAGGGGAGGGGCATGGGATG
GTTTCCAAAAAAAAAAAAAAACAGGAAGTGGGACGACATTTGAAATGTAA
ATAAATAAAATAATTAATAAAACATAAAAGCAATAACAATGAAGATACAG
TGCTCATGTATGAAGTTCTCAAAACAATTACTAATATGAGAATAGAGCCA
TTTGAAAAGTCAGTGAAGACAGACAGTCGGCCACCTTCCTGGTGAGAGCA
CGGGGGTCTGCCTGGCCTGAGAGGTTTGTGGCACAGGCGCCGGCGGGAGC
CTTCTTGGCTCATTGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCC
AGGGACTGCAGCTAAGTCATATGACTTGCACCTGACTTCCTCATATAAGA
CACAAACATCTTGAGTGCTGCGCAGGTGTACCAGGATTCAGGTGAATCCA
ATTTGGTGGAGATTTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGCC
TGGTGAAGTGGTGTGGCCTGCTGTGCGTGGATGGTAACTGATAGTATATA
AGAGTGAGAGGCCCGGTTTGGAAGGATTATTATTCGACAGAGGATTGTTA
TTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_f09.b1 MSMg01no068_f09.b1 CHROMAT_FILE:
MSMg01no068_f09.b1 PHD_FILE: MSMg01no068_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:44 2005
         (342 letters)



>mm_chr6_102514347_102515088
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 337/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactatctggagtgtctgtctgtgactccttccttcctcccatcaatttatccatccatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cactatctggagtgtctgtctgtgactccttccttcctcccatcaatttatccatccatt 479

                                                                       
Query: 61  atctatctattgcgtacccttaataattatattttaatgataaaagtggcgattttgcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atctatctattgcgtacccttaataattatattttaatgataaaagtggcgattttgcga 419

                                                                       
Query: 121 gattatgttagctcagctgcaagagacctggaatctatgtccttaaaaaccggtgctacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gattatgttagctcagctgcaagagacctggaatctatgtccttaaaaaccggtgctacc 359

                                                                       
Query: 181 tagatgccagctgtgaggcaggaggccacccagcggtgacttgctgaccgccaaccatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tagatgccagctgtgaggcaggaggccacccagcggtgacttgctgaccgccaaccatcc 299

                                                                       
Query: 241 agctcttcctggtcccttctgtggctggacagacgtaagctggctctagcagctcagggc 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 298 agctcttcctggtcccttctgtggctggacagacgtaaactggctctagcagctcagggc 239

                                                 
Query: 301 tcaggcagggaccggtggcagcggggcgcggaggcgca 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tcaggcagggaccggtggcagcggggcgcggaggcgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)