Query= MSMg01no068_k16.b1 MSMg01no068_k16.b1 CHROMAT_FILE:
MSMg01no068_k16.b1 PHD_FILE: MSMg01no068_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:10 2005
(500 letters)
>mm_chr6_113049317_113050216
Length = 900
Score = 959 bits (496), Expect = 0.0
Identities = 499/500 (99%)
Strand = Plus / Plus
Query: 1 atatttttggtgtttcatttgaaatataattatgagtggtggagactttaaacacagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatttttggtgtttcatttgaaatataattatgagtggtggagactttaaacacagtta 260
Query: 61 aaggaaagcagggaagacaaagggctctctaagaaaagggcttgggatgcgtggggtagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaaagcagggaagacaaagggctctctaagaaaagggcttgggatgcgtggggtagg 320
Query: 121 gatattccctttattttatcagagactgaaatggaagaaatttgacattctggtggctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatattccctttattttatcagagactgaaatggaagaaatttgacattctggtggctta 380
Query: 181 tggggagctgctcagagattgcttcttggctgagttgctgtctgcaaaggctgctaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggggagctgctcagagattgcttcttggctgagttgctgtctgcaaaggctgctaacaa 440
Query: 241 tcgcttgtctggcagcagatcttgttcatcaggattgcatcatctctgggagagtggtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 tcgcttgtctggcagcagatcttgttcatcaggattgcatcatctctgggagagtggcca 500
Query: 301 aggtccacagcctcagtacaaagactgtctgaagcatacgaggcctgttctctttctaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtccacagcctcagtacaaagactgtctgaagcatacgaggcctgttctctttctaaa 560
Query: 361 gctgcactcttcttcctgccagtcctcttcacaggattgctaaagctgacttgtgcgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgcactcttcttcctgccagtcctcttcacaggattgctaaagctgacttgtgcgttt 620
Query: 421 ctttcattgggttgactgtttactggtctcttgtctcccagctgcttccgcctcacctgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcattgggttgactgtttactggtctcttgtctcccagctgcttccgcctcacctgt 680
Query: 481 ctgatacatttcttctgaaa 500
||||||||||||||||||||
Sbjct: 681 ctgatacatttcttctgaaa 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_k16.g1 MSMg01no068_k16.g1 CHROMAT_FILE:
MSMg01no068_k16.g1 PHD_FILE: MSMg01no068_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:10 2005
(537 letters)
>mm_chr6_113189434_113190370
Length = 937
Score = 864 bits (447), Expect = 0.0
Identities = 478/495 (96%), Gaps = 12/495 (2%)
Strand = Plus / Minus
Query: 1 tcaggttctgagggcatgagcttaagtggcccatgatccaaagaggcccctggcagtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 808 tcaggttctgagggcatgagcttaagtggcccatgatccaaagaggcccctgggagtgag 749
Query: 61 tgacaagcaattctgtgatcatcattcaaggctgggaagaaacatgatgctggaccgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgacaagcaattctgtgatcatcattcaaggctgggaagaaacatgatgctggaccgtgg 689
Query: 121 gctctatattaactcacgtgtggcatgcttcaggtggtacctaagcccgttagcctcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gctctatattaactcacgtgtggcatgcttcaggtggtacctaagcccgttagcctcact 629
Query: 181 gcacagaagactgtggagtcacagggaggctgggcacatagtgagaccttgtcccaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gcacagaagactgtggagtcacagggaggctgggcacatagtgagaccttgtcccaaaaa 569
Query: 241 acaaagcaacagtaactgttgctttaggttactattatagcattaacacattatgttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 acaaagcaacagtaactgttgctttaggttactattatagcattaacacattatgttctt 509
Query: 301 ttaacaccaaacaatctttttttctgttctactgccccagaaattccagttgaagctcca 360
||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 508 ttaacaccaaaaaatctttttttctgttctacagccccagaaactccagttgaagctcca 449
Query: 361 gtcagctgggcacgatggtgcacatctacaatcttattacatgggatgttgaggcaggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtcagctgggcacgatggtgcacatctacaatcttattacatgggatgttgaggcaggag 389
Query: 421 gatgccgagttcagtgtgtgtgcgcatgtgtgtgtgcatgtgtgcgtgtatatttatata 480
|||||||||||||||||||| || |||||||||| |||||||||||||||
Sbjct: 388 gatgccgagttcagtgtgtg--cg----------tgcatgtgtgtgtgtatatttatata 341
Query: 481 tgaattactatatat 495
|||||||||||||||
Sbjct: 340 tgaattactatatat 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
