Query= MSMg01no068_m13.b1 MSMg01no068_m13.b1 CHROMAT_FILE:
MSMg01no068_m13.b1 PHD_FILE: MSMg01no068_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:19 2005
(316 letters)
>mm_chr6_45064224_45064939
Length = 716
Score = 601 bits (311), Expect = e-176
Identities = 311/311 (100%)
Strand = Plus / Minus
Query: 5 gaattccaggaatttaacatttctaaaacaaattatagatatagaagatttaaaagtgtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaattccaggaatttaacatttctaaaacaaattatagatatagaagatttaaaagtgtt 430
Query: 65 tactcacaagattacacacttgagatccatagaaatacattttggatgttgttttgatga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tactcacaagattacacacttgagatccatagaaatacattttggatgttgttttgatga 370
Query: 125 gtgaaagtaattctgaaattattggtcaaatgctatcaagttatcttttactattgtaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtgaaagtaattctgaaattattggtcaaatgctatcaagttatcttttactattgtaga 310
Query: 185 gtaatacgtaatgagcaagttgcaaatcaaaatatacttcactttggagagatatttttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtaatacgtaatgagcaagttgcaaatcaaaatatacttcactttggagagatatttttt 250
Query: 245 atacctaacctatcaaaacatacagtggctttgatataattacagatttaattaattaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atacctaacctatcaaaacatacagtggctttgatataattacagatttaattaattaat 190
Query: 305 taatttttgta 315
|||||||||||
Sbjct: 189 taatttttgta 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_m13.g1 MSMg01no068_m13.g1 CHROMAT_FILE:
MSMg01no068_m13.g1 PHD_FILE: MSMg01no068_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:20 2005
(284 letters)
>mm_chr6_44928988_44929672
Length = 685
Score = 505 bits (261), Expect = e-147
Identities = 279/285 (97%), Gaps = 1/285 (0%)
Strand = Plus / Plus
Query: 1 tcttgagtcaattttccccttcttgtggcatctgggaattgatctcaatcatcaggcctg 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgagtcaattttctccttcttgtggcatctgggaattgatctcaatcatcaggcctg 260
Query: 61 catacacatatcacatccatacaggtgatcttgctggcccttcctgttttcttgtatgtg 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catacacatatcacatccatataggtgatcttgctggcccttcctgttttcttgtatgtg 320
Query: 121 ttctcgtgcaaatgtctgtagcaatcacccagaaaacagttcttcaattcttccctgtat 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctcgtacaaatgtctgtagcaatcacccagaaaacagttcttcaattcttccctgtat 380
Query: 181 ggttgactatttcttctttaccttgattaaataaaattaagtctttacaaaatctgatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttgactatttcttctttaccttgattaaataaaattaagtctttacaaaatctgatct 440
Query: 241 gtgattgattgacacacatta-tttttactaagacctacatgaga 284
|||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 441 gtgattgactgacacacatttgtttttactaagacctacatgaga 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space: 185900
Effective search space used: 185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
