BAC Information

Click to search

BAC

Clone NameMSMg01-069E02
Chromosome6 (Build37)
Map Location 31,580,371 - 31,580,534
singlet/doubletsinglet
Overlap genenone
Upstream geneCpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl, EG619959
Downstream geneLOC620104, 1700012A03Rik, Plxna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069E02.T7 (MSMg01no069_e02.b1)MSMg01-069E02.TJ (MSMg01no069_e02.g1)
ACCAG293555AG293556
length692685
length of high quality
(start - end)
289 (73 - 361)160 (61 - 220)
definitionCHROMAT_FILE: MSMg01no069_e02.b1 PHD_FILE: MSMg01no069_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:58 2005CHROMAT_FILE: MSMg01no069_e02.g1 PHD_FILE: MSMg01no069_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAATATTTCCCTTTAGAGATGATATGATAGTATATATAAGTGACC
CTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGGTTCAATGAA
GTATCAATGGATATACAATTAACTCAAACAAGTCAATGGCCTTTCTCTAC
ACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTC
AATAGTCACAAATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAG
TGAAAGACATGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAA
GAAGATCTCATATTATGGAAAGATCCTCCATGCTCATAGATTGCCAGGAT
CAATATAGTAAAAATGGCTACCTTGCCAAAGGCAACCTACAGATTCAACA
TAATCCCCATCAAAACTCCTACTCACTTCTTCAACAAATTGGATAGGGAA
ATCTCCACATTCATCGTAGAAAGACCCTAAACCTATGACACCTTATAGCT
TTCTCTTGCCTATTACAATCCCTGATGCAATCTTTTTGCCTGACCTATTG
CCGTTTCTACTAGTAATTATGATTATAAATTGTTCGGTACTGGTTTAGCG
TTCTACTACTACTACCATTGTATTAAACTTGTACCCTCTAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAGTGCTGGGTCCCCCAACCCCAGACACCCCCCTCTAGCT
GCAGATGACGTCATGGGCTCTATCTTGAGAAGAGAGCCATTTATGTTGCT
AGAAAGGAGCCAGGTGACTCAGGCTTTTACTGCCAATGGTGGGCAGTCTT
GAGGGGAAACCCAGGCATGTAGGCACATAGGGGACAAGGTCTGTGAACTC
AAATGTGATGGCTGTCACTGGATCTTGGCACAGGTGAATAACTCTCTTAT
CAACCTTATCATCAGAGCCTACACTGGAACTTGTAGATGGGGCATTTTTT
TATGTCCCCGCTCCCTCTCACATGGTTCTGGGAAGTCATCTTGATCTGTT
ACAAAAAAGAAAAACAAGAATCCTTTATGAGTGGGGCTCCACAGTGTTAT
TACTCATGCTTGTCTGCTTTGGGCAGTTCCCGATTTTTTTGCATGGAAGT
CGCCAAAGTCGATTAACGTTGGATTTACAAAGGCGCTTCCGTCATCATAT
TTGTGCCTTATTCCTTGTCTCTTCGTCCTTCTTGCTACGATCCTTATTCT
CTTCTTTCTATCCTCCTAACCCGTATCCCGGTTCCCCATCTTCATAAAAG
TCCAAACTTTCAACCCATTTTAATTTATCCTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_e02.g1 MSMg01no069_e02.g1 CHROMAT_FILE:
MSMg01no069_e02.g1 PHD_FILE: MSMg01no069_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:58 2005
         (160 letters)



>mm_chr6_31580171_31580734
          Length = 564

 Score =  290 bits (150), Expect = 3e-83
 Identities = 159/164 (96%), Gaps = 4/164 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgctgggtcccccaaccccagacacccccctctagctgcagatgacgtcatgggctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cagtgctgggtcccccaaccccagacacccccctctagctgcagatgaggtcatgggctc 260

                                                                       
Query: 61  tatcttgagaagagagccatttatgttgctagaaaggagccaggt----gactcaggctt 116
           |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 261 tatcttgagaagagagccatttatgttgctagaaaggagccaggtaggtgactcaggctt 320

                                                       
Query: 117 ttactgccaatggtgggcagtcttgaggggaaacccaggcatgt 160
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactgccaatggtgggcagtcttgaggggaaacccaggcatgt 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 564
Length adjustment: 8
Effective length of query: 152
Effective length of database: 556
Effective search space:    84512
Effective search space used:    84512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)