BAC Information

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BAC

Clone NameMSMg01-069F04
Chromosome6 (Build37)
Map Location 110,940,307 - 110,940,517
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069F04.T7 (MSMg01no069_f04.b1)MSMg01-069F04.TJ (MSMg01no069_f04.g1)
ACCAG293607AG293608
length758759
length of high quality
(start - end)
49 (129 - 177)211 (139 - 349)
definitionCHROMAT_FILE: MSMg01no069_f04.b1 PHD_FILE: MSMg01no069_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:03 2005CHROMAT_FILE: MSMg01no069_f04.g1 PHD_FILE: MSMg01no069_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTCTCTCCTTTTTTTTCTTCTCTTTTCTTCTTCCCTCTTTCCTCTTC
CCCCCCCCCCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAG
AGGTCCGCGGAATTCAAATATCTGCCATTTTAAATTATTTATTATTGTAT
TAAATACATTTTATTTATTGTTATTGCATGTCCATGCTATGTGCATATGT
TATGTTTGTATTGTATGCTTGTGGGGGCAGTGTACATGTATAACGAACAC
ATGAAGAATTCATATGACACCTTCTACAACCTGTTCTCTTCTTCTACTTC
AACATTCATTCTAGTATACAATCTCAGGTTACCAGGATTACACTATAAGG
TACTTTTACCTGCTGCACAGGCTCACTGTTTCTCACATCCCAGCAATTAT
TTGAAAGCACTGTCTGTATTCTTTGTTCCCTGCCCTACCCCTTTGTTTTT
CTATCCTCTTCAGTTACTTCGCCCCACCTATTCCATTTTGCTCTTTCTTG
TTAGTGCCACCCTTTCATTTTTGTGCTTACCACCTCACCCATACCTCTAC
ACTACACCCACTTCCTCCTGATTCCTCCCCTTTCACTCTTGTCTTCACCC
CTTCTGTTTCCTTTCTTTTTATTTTTCCTCCTTCCCCCACCCCCCCTTAC
TCTCTTTCCCGTCCCTTTGTCTTTCTTTTTCCGCTCCTCCTCCTTTTTTT
TTTTTTCCCCGTTCCCCCCCCTTCCCTTTTTTTTTTTTTCCCCTTCCTCC
CCCCTCCC
NTTTTTTTTTCTTNTTTTTTTTTTCCTTTTTCTTCTTTTTTTCCCCTTCC
CCTTGTTCTNCCCACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGCCTAGAA
GCTATTCAGATCTATCTGTCTCCACTGGAAGTGAACGGGGTTATGCACTT
GTGGAACACACTAAATCACCCTCCAGTGTACCTATCAGCAATAGGCATTT
GTATAAATGTATAAATTGTATAAAACCTAAGAAACTTTTTCTTCTGTTCT
TCACTGTGCCCAATTGCTTCCCCCATTTGTCTACTTTCCTATTCTGAAAT
TCATCATGTTGTGTTGCACTCCCTAGTCTGCTCTTATGGGATTTGCATGA
CAATAAAATTCCATTTTGAGGATTTTTATCACTCCACCGCCCATATTTGC
TCTTTTGATCTTGCCGTACTTAGCCTACACATGCTATTGCTTTAATTCGC
CCCATATTTAAACTTCCCTTTACCTTAAGTACATTTGATGGCCCTCCTGA
CGGTACCTTTCGACTTTTTTTGCCCCATTTCGACGTTTTTGTTAACACCC
CCTTCTTCCTTACAACATTCTTTTCCTTTGTTTTACCCTTTTTACCCACT
TTTTCTCTATCCTCCCAACTACTTCCCTTTCCTCTCCCTCCTGTTTTTTT
TGCCGCTTTCCCTTAACTCGTAAACCAACATTATTCTTATTGTCTCTGTC
CTCCCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_f04.g1 MSMg01no069_f04.g1 CHROMAT_FILE:
MSMg01no069_f04.g1 PHD_FILE: MSMg01no069_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:03 2005
         (211 letters)



>mm_chr6_110940107_110940717
          Length = 611

 Score =  377 bits (195), Expect = e-109
 Identities = 207/211 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgcctagaagctattcagatctatctgtctccactggaagtgaacggggttatgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atttgcctagaagctattcagatctatctgtctccactggaagtgaaaggggttatgcac 260

                                                                       
Query: 61  ttgtggaacacactaaatcaccctccagtgtacctatcagcaataggcatttgtataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtggaacacactaaatcaccctccagtgtacctatcagcaataggcatttgtataaat 320

                                                                       
Query: 121 gtataaattgtataaaacctaagaaactttttcttctgttcttcactgtgcccaattgct 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||
Sbjct: 321 gtataaattgtataaaaccaaagaaactttttcttctgttcttcactgtgttcaattgct 380

                                          
Query: 181 tcccccatttgtctactttcctattctgaaa 211
           |||||||||||||||||||||||||||||||
Sbjct: 381 tcccccatttgtctactttcctattctgaaa 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)